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Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics

During the COVID-19 pandemic it is essential to test as many people as possible, in order to detect early outbreaks of the infection. Present testing solutions are based on the extraction of RNA from patients using oropharyngeal and nasopharyngeal swabs, and then testing with real-time PCR for the p...

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Autores principales: Žilinskas, Julius, Lančinskas, Algirdas, Guarracino, Mario R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7876015/
https://www.ncbi.nlm.nih.gov/pubmed/33568738
http://dx.doi.org/10.1038/s41598-021-83104-4
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author Žilinskas, Julius
Lančinskas, Algirdas
Guarracino, Mario R.
author_facet Žilinskas, Julius
Lančinskas, Algirdas
Guarracino, Mario R.
author_sort Žilinskas, Julius
collection PubMed
description During the COVID-19 pandemic it is essential to test as many people as possible, in order to detect early outbreaks of the infection. Present testing solutions are based on the extraction of RNA from patients using oropharyngeal and nasopharyngeal swabs, and then testing with real-time PCR for the presence of specific RNA filaments identifying the virus. This approach is limited by the availability of reactants, trained technicians and laboratories. One of the ways to speed up the testing procedures is a group testing, where the swabs of multiple patients are grouped together and tested. In this paper we propose to use the group testing technique in conjunction with an advanced replication scheme in which each patient is allocated in two or more groups to reduce the total numbers of tests and to allow testing of even larger numbers of people. Under mild assumptions, a 13 ×  average reduction of tests can be achieved compared to individual testing without delay in time.
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spelling pubmed-78760152021-02-11 Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics Žilinskas, Julius Lančinskas, Algirdas Guarracino, Mario R. Sci Rep Article During the COVID-19 pandemic it is essential to test as many people as possible, in order to detect early outbreaks of the infection. Present testing solutions are based on the extraction of RNA from patients using oropharyngeal and nasopharyngeal swabs, and then testing with real-time PCR for the presence of specific RNA filaments identifying the virus. This approach is limited by the availability of reactants, trained technicians and laboratories. One of the ways to speed up the testing procedures is a group testing, where the swabs of multiple patients are grouped together and tested. In this paper we propose to use the group testing technique in conjunction with an advanced replication scheme in which each patient is allocated in two or more groups to reduce the total numbers of tests and to allow testing of even larger numbers of people. Under mild assumptions, a 13 ×  average reduction of tests can be achieved compared to individual testing without delay in time. Nature Publishing Group UK 2021-02-10 /pmc/articles/PMC7876015/ /pubmed/33568738 http://dx.doi.org/10.1038/s41598-021-83104-4 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Žilinskas, Julius
Lančinskas, Algirdas
Guarracino, Mario R.
Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics
title Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics
title_full Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics
title_fullStr Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics
title_full_unstemmed Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics
title_short Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics
title_sort pooled testing with replication as a mass testing strategy for the covid-19 pandemics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7876015/
https://www.ncbi.nlm.nih.gov/pubmed/33568738
http://dx.doi.org/10.1038/s41598-021-83104-4
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