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Quantum chemical benchmark databases of gold-standard dimer interaction energies
Advances in computational chemistry create an ongoing need for larger and higher-quality datasets that characterize noncovalent molecular interactions. We present three benchmark collections of quantum mechanical data, covering approximately 3,700 distinct types of interacting molecule pairs. The fi...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7876112/ https://www.ncbi.nlm.nih.gov/pubmed/33568655 http://dx.doi.org/10.1038/s41597-021-00833-x |
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author | Donchev, Alexander G. Taube, Andrew G. Decolvenaere, Elizabeth Hargus, Cory McGibbon, Robert T. Law, Ka-Hei Gregersen, Brent A. Li, Je-Luen Palmo, Kim Siva, Karthik Bergdorf, Michael Klepeis, John L. Shaw, David E. |
author_facet | Donchev, Alexander G. Taube, Andrew G. Decolvenaere, Elizabeth Hargus, Cory McGibbon, Robert T. Law, Ka-Hei Gregersen, Brent A. Li, Je-Luen Palmo, Kim Siva, Karthik Bergdorf, Michael Klepeis, John L. Shaw, David E. |
author_sort | Donchev, Alexander G. |
collection | PubMed |
description | Advances in computational chemistry create an ongoing need for larger and higher-quality datasets that characterize noncovalent molecular interactions. We present three benchmark collections of quantum mechanical data, covering approximately 3,700 distinct types of interacting molecule pairs. The first collection, which we refer to as DES370K, contains interaction energies for more than 370,000 dimer geometries. These were computed using the coupled-cluster method with single, double, and perturbative triple excitations [CCSD(T)], which is widely regarded as the gold-standard method in electronic structure theory. Our second benchmark collection, a core representative subset of DES370K called DES15K, is intended for more computationally demanding applications of the data. Finally, DES5M, our third collection, comprises interaction energies for nearly 5,000,000 dimer geometries; these were calculated using SNS-MP2, a machine learning approach that provides results with accuracy comparable to that of our coupled-cluster training data. These datasets may prove useful in the development of density functionals, empirically corrected wavefunction-based approaches, semi-empirical methods, force fields, and models trained using machine learning methods. |
format | Online Article Text |
id | pubmed-7876112 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78761122021-02-18 Quantum chemical benchmark databases of gold-standard dimer interaction energies Donchev, Alexander G. Taube, Andrew G. Decolvenaere, Elizabeth Hargus, Cory McGibbon, Robert T. Law, Ka-Hei Gregersen, Brent A. Li, Je-Luen Palmo, Kim Siva, Karthik Bergdorf, Michael Klepeis, John L. Shaw, David E. Sci Data Data Descriptor Advances in computational chemistry create an ongoing need for larger and higher-quality datasets that characterize noncovalent molecular interactions. We present three benchmark collections of quantum mechanical data, covering approximately 3,700 distinct types of interacting molecule pairs. The first collection, which we refer to as DES370K, contains interaction energies for more than 370,000 dimer geometries. These were computed using the coupled-cluster method with single, double, and perturbative triple excitations [CCSD(T)], which is widely regarded as the gold-standard method in electronic structure theory. Our second benchmark collection, a core representative subset of DES370K called DES15K, is intended for more computationally demanding applications of the data. Finally, DES5M, our third collection, comprises interaction energies for nearly 5,000,000 dimer geometries; these were calculated using SNS-MP2, a machine learning approach that provides results with accuracy comparable to that of our coupled-cluster training data. These datasets may prove useful in the development of density functionals, empirically corrected wavefunction-based approaches, semi-empirical methods, force fields, and models trained using machine learning methods. Nature Publishing Group UK 2021-02-10 /pmc/articles/PMC7876112/ /pubmed/33568655 http://dx.doi.org/10.1038/s41597-021-00833-x Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Donchev, Alexander G. Taube, Andrew G. Decolvenaere, Elizabeth Hargus, Cory McGibbon, Robert T. Law, Ka-Hei Gregersen, Brent A. Li, Je-Luen Palmo, Kim Siva, Karthik Bergdorf, Michael Klepeis, John L. Shaw, David E. Quantum chemical benchmark databases of gold-standard dimer interaction energies |
title | Quantum chemical benchmark databases of gold-standard dimer interaction energies |
title_full | Quantum chemical benchmark databases of gold-standard dimer interaction energies |
title_fullStr | Quantum chemical benchmark databases of gold-standard dimer interaction energies |
title_full_unstemmed | Quantum chemical benchmark databases of gold-standard dimer interaction energies |
title_short | Quantum chemical benchmark databases of gold-standard dimer interaction energies |
title_sort | quantum chemical benchmark databases of gold-standard dimer interaction energies |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7876112/ https://www.ncbi.nlm.nih.gov/pubmed/33568655 http://dx.doi.org/10.1038/s41597-021-00833-x |
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