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Computational scanning tunneling microscope image database
We introduce the systematic database of scanning tunneling microscope (STM) images obtained using density functional theory (DFT) for two-dimensional (2D) materials, calculated using the Tersoff-Hamann method. It currently contains data for 716 exfoliable 2D materials. Examples of the five possible...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7878481/ https://www.ncbi.nlm.nih.gov/pubmed/33574307 http://dx.doi.org/10.1038/s41597-021-00824-y |
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author | Choudhary, Kamal Garrity, Kevin F. Camp, Charles Kalinin, Sergei V. Vasudevan, Rama Ziatdinov, Maxim Tavazza, Francesca |
author_facet | Choudhary, Kamal Garrity, Kevin F. Camp, Charles Kalinin, Sergei V. Vasudevan, Rama Ziatdinov, Maxim Tavazza, Francesca |
author_sort | Choudhary, Kamal |
collection | PubMed |
description | We introduce the systematic database of scanning tunneling microscope (STM) images obtained using density functional theory (DFT) for two-dimensional (2D) materials, calculated using the Tersoff-Hamann method. It currently contains data for 716 exfoliable 2D materials. Examples of the five possible Bravais lattice types for 2D materials and their Fourier-transforms are discussed. All the computational STM images generated in this work are made available on the JARVIS-STM website (https://jarvis.nist.gov/jarvisstm). We find excellent qualitative agreement between the computational and experimental STM images for selected materials. As a first example application of this database, we train a convolution neural network model to identify the Bravais lattice from the STM images. We believe the model can aid high-throughput experimental data analysis. These computational STM images can directly aid the identification of phases, analyzing defects and lattice-distortions in experimental STM images, as well as be incorporated in the autonomous experiment workflows. |
format | Online Article Text |
id | pubmed-7878481 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78784812021-02-24 Computational scanning tunneling microscope image database Choudhary, Kamal Garrity, Kevin F. Camp, Charles Kalinin, Sergei V. Vasudevan, Rama Ziatdinov, Maxim Tavazza, Francesca Sci Data Data Descriptor We introduce the systematic database of scanning tunneling microscope (STM) images obtained using density functional theory (DFT) for two-dimensional (2D) materials, calculated using the Tersoff-Hamann method. It currently contains data for 716 exfoliable 2D materials. Examples of the five possible Bravais lattice types for 2D materials and their Fourier-transforms are discussed. All the computational STM images generated in this work are made available on the JARVIS-STM website (https://jarvis.nist.gov/jarvisstm). We find excellent qualitative agreement between the computational and experimental STM images for selected materials. As a first example application of this database, we train a convolution neural network model to identify the Bravais lattice from the STM images. We believe the model can aid high-throughput experimental data analysis. These computational STM images can directly aid the identification of phases, analyzing defects and lattice-distortions in experimental STM images, as well as be incorporated in the autonomous experiment workflows. Nature Publishing Group UK 2021-02-11 /pmc/articles/PMC7878481/ /pubmed/33574307 http://dx.doi.org/10.1038/s41597-021-00824-y Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Choudhary, Kamal Garrity, Kevin F. Camp, Charles Kalinin, Sergei V. Vasudevan, Rama Ziatdinov, Maxim Tavazza, Francesca Computational scanning tunneling microscope image database |
title | Computational scanning tunneling microscope image database |
title_full | Computational scanning tunneling microscope image database |
title_fullStr | Computational scanning tunneling microscope image database |
title_full_unstemmed | Computational scanning tunneling microscope image database |
title_short | Computational scanning tunneling microscope image database |
title_sort | computational scanning tunneling microscope image database |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7878481/ https://www.ncbi.nlm.nih.gov/pubmed/33574307 http://dx.doi.org/10.1038/s41597-021-00824-y |
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