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Computational scanning tunneling microscope image database

We introduce the systematic database of scanning tunneling microscope (STM) images obtained using density functional theory (DFT) for two-dimensional (2D) materials, calculated using the Tersoff-Hamann method. It currently contains data for 716 exfoliable 2D materials. Examples of the five possible...

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Autores principales: Choudhary, Kamal, Garrity, Kevin F., Camp, Charles, Kalinin, Sergei V., Vasudevan, Rama, Ziatdinov, Maxim, Tavazza, Francesca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7878481/
https://www.ncbi.nlm.nih.gov/pubmed/33574307
http://dx.doi.org/10.1038/s41597-021-00824-y
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author Choudhary, Kamal
Garrity, Kevin F.
Camp, Charles
Kalinin, Sergei V.
Vasudevan, Rama
Ziatdinov, Maxim
Tavazza, Francesca
author_facet Choudhary, Kamal
Garrity, Kevin F.
Camp, Charles
Kalinin, Sergei V.
Vasudevan, Rama
Ziatdinov, Maxim
Tavazza, Francesca
author_sort Choudhary, Kamal
collection PubMed
description We introduce the systematic database of scanning tunneling microscope (STM) images obtained using density functional theory (DFT) for two-dimensional (2D) materials, calculated using the Tersoff-Hamann method. It currently contains data for 716 exfoliable 2D materials. Examples of the five possible Bravais lattice types for 2D materials and their Fourier-transforms are discussed. All the computational STM images generated in this work are made available on the JARVIS-STM website (https://jarvis.nist.gov/jarvisstm). We find excellent qualitative agreement between the computational and experimental STM images for selected materials. As a first example application of this database, we train a convolution neural network model to identify the Bravais lattice from the STM images. We believe the model can aid high-throughput experimental data analysis. These computational STM images can directly aid the identification of phases, analyzing defects and lattice-distortions in experimental STM images, as well as be incorporated in the autonomous experiment workflows.
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spelling pubmed-78784812021-02-24 Computational scanning tunneling microscope image database Choudhary, Kamal Garrity, Kevin F. Camp, Charles Kalinin, Sergei V. Vasudevan, Rama Ziatdinov, Maxim Tavazza, Francesca Sci Data Data Descriptor We introduce the systematic database of scanning tunneling microscope (STM) images obtained using density functional theory (DFT) for two-dimensional (2D) materials, calculated using the Tersoff-Hamann method. It currently contains data for 716 exfoliable 2D materials. Examples of the five possible Bravais lattice types for 2D materials and their Fourier-transforms are discussed. All the computational STM images generated in this work are made available on the JARVIS-STM website (https://jarvis.nist.gov/jarvisstm). We find excellent qualitative agreement between the computational and experimental STM images for selected materials. As a first example application of this database, we train a convolution neural network model to identify the Bravais lattice from the STM images. We believe the model can aid high-throughput experimental data analysis. These computational STM images can directly aid the identification of phases, analyzing defects and lattice-distortions in experimental STM images, as well as be incorporated in the autonomous experiment workflows. Nature Publishing Group UK 2021-02-11 /pmc/articles/PMC7878481/ /pubmed/33574307 http://dx.doi.org/10.1038/s41597-021-00824-y Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Choudhary, Kamal
Garrity, Kevin F.
Camp, Charles
Kalinin, Sergei V.
Vasudevan, Rama
Ziatdinov, Maxim
Tavazza, Francesca
Computational scanning tunneling microscope image database
title Computational scanning tunneling microscope image database
title_full Computational scanning tunneling microscope image database
title_fullStr Computational scanning tunneling microscope image database
title_full_unstemmed Computational scanning tunneling microscope image database
title_short Computational scanning tunneling microscope image database
title_sort computational scanning tunneling microscope image database
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7878481/
https://www.ncbi.nlm.nih.gov/pubmed/33574307
http://dx.doi.org/10.1038/s41597-021-00824-y
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