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Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades
Circular RNAs (circRNAs) have a critical regulatory function in human glioma. However, novel circRNAs related to different pathological grades of glioma and their crucial potential function are worth screening and prediction. CircRNA expression profiling was performed for 6 paired high- and low-grad...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7880344/ https://www.ncbi.nlm.nih.gov/pubmed/33323543 http://dx.doi.org/10.18632/aging.202192 |
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author | Geng, Xiuchao Zhang, Yuhao Li, Qiang Xi, Wang Yu, Wentao Shi, Liang Lin, Xiaomeng Sun, Shaoguang Wang, Hong |
author_facet | Geng, Xiuchao Zhang, Yuhao Li, Qiang Xi, Wang Yu, Wentao Shi, Liang Lin, Xiaomeng Sun, Shaoguang Wang, Hong |
author_sort | Geng, Xiuchao |
collection | PubMed |
description | Circular RNAs (circRNAs) have a critical regulatory function in human glioma. However, novel circRNAs related to different pathological grades of glioma and their crucial potential function are worth screening and prediction. CircRNA expression profiling was performed for 6 paired high- and low-grade glioma tissues and 5 adjacent normal brain tissues through next-generation sequencing. Quantitative real-time PCR (qRT-PCR) was conducted to validate circRNA expression. Bioinformatics analysis was performed, and circRNA-miRNA-mRNA networks were constructed. The expression and survival data of miRNAs and target genes were examined by GEPIA, Chinese Glioma Genome Atlas (CGGA), ONCOMINE, and cBioPortal databases. The RNA binding proteins (RBPs), open reading frames (ORFs) and N6-methyladenosine (m(6)A) modifications of the identified circRNAs were also predicted. Through multilevel research screening, 4 circRNAs (hsa_circ_0000915, hsa_circ_0127664, hsa_circ_0008362, and hsa_circ_0001467) were associated with glioma of different pathological grades and could be preferred candidates for subsequent functional analysis. Therefore, circRNAs are associated with the different pathological grades of glioma and reveal their potential critical regulatory function. CircRNAs might provide vital molecular biomarkers and potential therapeutic targets for glioma. |
format | Online Article Text |
id | pubmed-7880344 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-78803442021-02-22 Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades Geng, Xiuchao Zhang, Yuhao Li, Qiang Xi, Wang Yu, Wentao Shi, Liang Lin, Xiaomeng Sun, Shaoguang Wang, Hong Aging (Albany NY) Research Paper Circular RNAs (circRNAs) have a critical regulatory function in human glioma. However, novel circRNAs related to different pathological grades of glioma and their crucial potential function are worth screening and prediction. CircRNA expression profiling was performed for 6 paired high- and low-grade glioma tissues and 5 adjacent normal brain tissues through next-generation sequencing. Quantitative real-time PCR (qRT-PCR) was conducted to validate circRNA expression. Bioinformatics analysis was performed, and circRNA-miRNA-mRNA networks were constructed. The expression and survival data of miRNAs and target genes were examined by GEPIA, Chinese Glioma Genome Atlas (CGGA), ONCOMINE, and cBioPortal databases. The RNA binding proteins (RBPs), open reading frames (ORFs) and N6-methyladenosine (m(6)A) modifications of the identified circRNAs were also predicted. Through multilevel research screening, 4 circRNAs (hsa_circ_0000915, hsa_circ_0127664, hsa_circ_0008362, and hsa_circ_0001467) were associated with glioma of different pathological grades and could be preferred candidates for subsequent functional analysis. Therefore, circRNAs are associated with the different pathological grades of glioma and reveal their potential critical regulatory function. CircRNAs might provide vital molecular biomarkers and potential therapeutic targets for glioma. Impact Journals 2020-12-11 /pmc/articles/PMC7880344/ /pubmed/33323543 http://dx.doi.org/10.18632/aging.202192 Text en Copyright: © 2020 Geng et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Geng, Xiuchao Zhang, Yuhao Li, Qiang Xi, Wang Yu, Wentao Shi, Liang Lin, Xiaomeng Sun, Shaoguang Wang, Hong Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades |
title | Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades |
title_full | Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades |
title_fullStr | Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades |
title_full_unstemmed | Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades |
title_short | Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades |
title_sort | screening and functional prediction of differentially expressed circular rnas in human glioma of different grades |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7880344/ https://www.ncbi.nlm.nih.gov/pubmed/33323543 http://dx.doi.org/10.18632/aging.202192 |
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