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Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping

BACKGROUND: The purpose of this study was to develop a software tool and evaluate different T1 map calculation methods in terms of computation time in cardiac magnetic resonance imaging. METHODS: The modified Look-Locker inversion recovery (MOLLI) sequence was used to acquire multiple inversion time...

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Autores principales: Kim, Yoon-Chul, Kim, Khu Rai, Lee, Hyelee, Choe, Yeon Hyeon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7881681/
https://www.ncbi.nlm.nih.gov/pubmed/33579214
http://dx.doi.org/10.1186/s12880-021-00558-8
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author Kim, Yoon-Chul
Kim, Khu Rai
Lee, Hyelee
Choe, Yeon Hyeon
author_facet Kim, Yoon-Chul
Kim, Khu Rai
Lee, Hyelee
Choe, Yeon Hyeon
author_sort Kim, Yoon-Chul
collection PubMed
description BACKGROUND: The purpose of this study was to develop a software tool and evaluate different T1 map calculation methods in terms of computation time in cardiac magnetic resonance imaging. METHODS: The modified Look-Locker inversion recovery (MOLLI) sequence was used to acquire multiple inversion time (TI) images for pre- and post-contrast T1 mapping. The T1 map calculation involved pixel-wise curve fitting based on the T1 relaxation model. A variety of methods were evaluated using data from 30 subjects for computational efficiency: MRmap, python Levenberg–Marquardt (LM), python reduced-dimension (RD) non-linear least square, C++ single- and multi-core LM, and C++ single- and multi-core RD. RESULTS: Median (interquartile range) computation time was 126 s (98–141) for the publicly available software MRmap, 261 s (249–282) for python LM, 77 s (74–80) for python RD, 3.4 s (3.1–3.6) for C++ multi-core LM, and 1.9 s (1.9–2.0) for C++ multi-core RD. The fastest C++ multi-core RD and the publicly available MRmap showed good agreement of myocardial T1 values, resulting in 95% Bland–Altman limits of agreement of (− 0.83 to 0.58 ms) and (− 6.57 to 7.36 ms) with mean differences of − 0.13 ms and 0.39 ms, for the pre- and post-contrast, respectively. CONCLUSION: The C++ multi-core RD was the fastest method on a regular eight-core personal computer for pre- or post-contrast T1 map calculation. The presented software tool (fT1fit) facilitated rapid T1 map and extracellular volume fraction map calculations.
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spelling pubmed-78816812021-02-17 Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping Kim, Yoon-Chul Kim, Khu Rai Lee, Hyelee Choe, Yeon Hyeon BMC Med Imaging Research Article BACKGROUND: The purpose of this study was to develop a software tool and evaluate different T1 map calculation methods in terms of computation time in cardiac magnetic resonance imaging. METHODS: The modified Look-Locker inversion recovery (MOLLI) sequence was used to acquire multiple inversion time (TI) images for pre- and post-contrast T1 mapping. The T1 map calculation involved pixel-wise curve fitting based on the T1 relaxation model. A variety of methods were evaluated using data from 30 subjects for computational efficiency: MRmap, python Levenberg–Marquardt (LM), python reduced-dimension (RD) non-linear least square, C++ single- and multi-core LM, and C++ single- and multi-core RD. RESULTS: Median (interquartile range) computation time was 126 s (98–141) for the publicly available software MRmap, 261 s (249–282) for python LM, 77 s (74–80) for python RD, 3.4 s (3.1–3.6) for C++ multi-core LM, and 1.9 s (1.9–2.0) for C++ multi-core RD. The fastest C++ multi-core RD and the publicly available MRmap showed good agreement of myocardial T1 values, resulting in 95% Bland–Altman limits of agreement of (− 0.83 to 0.58 ms) and (− 6.57 to 7.36 ms) with mean differences of − 0.13 ms and 0.39 ms, for the pre- and post-contrast, respectively. CONCLUSION: The C++ multi-core RD was the fastest method on a regular eight-core personal computer for pre- or post-contrast T1 map calculation. The presented software tool (fT1fit) facilitated rapid T1 map and extracellular volume fraction map calculations. BioMed Central 2021-02-12 /pmc/articles/PMC7881681/ /pubmed/33579214 http://dx.doi.org/10.1186/s12880-021-00558-8 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Kim, Yoon-Chul
Kim, Khu Rai
Lee, Hyelee
Choe, Yeon Hyeon
Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
title Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
title_full Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
title_fullStr Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
title_full_unstemmed Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
title_short Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
title_sort fast calculation software for modified look-locker inversion recovery (molli) t1 mapping
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7881681/
https://www.ncbi.nlm.nih.gov/pubmed/33579214
http://dx.doi.org/10.1186/s12880-021-00558-8
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