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NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing

Diffusion-weighted magnetic resonance imaging (dMRI) has found great utility for a wide range of neuroscientific and clinical applications. However, high-resolution dMRI, which is required for improved delineation of fine brain structures and connectomics, is hampered by its low signal-to-noise rati...

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Autores principales: Moeller, Steen, Pisharady, Pramod Kumar, Ramanna, Sudhir, Lenglet, Christophe, Wu, Xiaoping, Dowdle, Logan, Yacoub, Essa, Uğurbil, Kamil, Akçakaya, Mehmet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7881933/
https://www.ncbi.nlm.nih.gov/pubmed/33186723
http://dx.doi.org/10.1016/j.neuroimage.2020.117539
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author Moeller, Steen
Pisharady, Pramod Kumar
Ramanna, Sudhir
Lenglet, Christophe
Wu, Xiaoping
Dowdle, Logan
Yacoub, Essa
Uğurbil, Kamil
Akçakaya, Mehmet
author_facet Moeller, Steen
Pisharady, Pramod Kumar
Ramanna, Sudhir
Lenglet, Christophe
Wu, Xiaoping
Dowdle, Logan
Yacoub, Essa
Uğurbil, Kamil
Akçakaya, Mehmet
author_sort Moeller, Steen
collection PubMed
description Diffusion-weighted magnetic resonance imaging (dMRI) has found great utility for a wide range of neuroscientific and clinical applications. However, high-resolution dMRI, which is required for improved delineation of fine brain structures and connectomics, is hampered by its low signal-to-noise ratio (SNR). Since dMRI relies on the acquisition of multiple different diffusion weighted images of the same anatomy, it is well-suited for denoising methods that utilize correlations across the image series to improve the apparent SNR and the subsequent data analysis. In this work, we introduce and quantitatively evaluate a comprehensive framework, NOise Reduction with DIstribution Corrected (NORDIC) PCA method for processing dMRI. NORDIC uses low-rank modeling of g-factor-corrected complex dMRI reconstruction and non-asymptotic random matrix distributions to remove signal components which cannot be distinguished from thermal noise. The utility of the proposed framework for denoising dMRI is demonstrated on both simulations and experimental data obtained at 3 Tesla with different resolutions using human connectome project style acquisitions. The proposed framework leads to substantially enhanced quantitative performance for estimating diffusion tractography related measures and for resolving crossing fibers as compared to a conventional/state-of-the-art dMRI denoising method.
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spelling pubmed-78819332021-02-13 NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing Moeller, Steen Pisharady, Pramod Kumar Ramanna, Sudhir Lenglet, Christophe Wu, Xiaoping Dowdle, Logan Yacoub, Essa Uğurbil, Kamil Akçakaya, Mehmet Neuroimage Article Diffusion-weighted magnetic resonance imaging (dMRI) has found great utility for a wide range of neuroscientific and clinical applications. However, high-resolution dMRI, which is required for improved delineation of fine brain structures and connectomics, is hampered by its low signal-to-noise ratio (SNR). Since dMRI relies on the acquisition of multiple different diffusion weighted images of the same anatomy, it is well-suited for denoising methods that utilize correlations across the image series to improve the apparent SNR and the subsequent data analysis. In this work, we introduce and quantitatively evaluate a comprehensive framework, NOise Reduction with DIstribution Corrected (NORDIC) PCA method for processing dMRI. NORDIC uses low-rank modeling of g-factor-corrected complex dMRI reconstruction and non-asymptotic random matrix distributions to remove signal components which cannot be distinguished from thermal noise. The utility of the proposed framework for denoising dMRI is demonstrated on both simulations and experimental data obtained at 3 Tesla with different resolutions using human connectome project style acquisitions. The proposed framework leads to substantially enhanced quantitative performance for estimating diffusion tractography related measures and for resolving crossing fibers as compared to a conventional/state-of-the-art dMRI denoising method. 2020-11-10 2021-02-01 /pmc/articles/PMC7881933/ /pubmed/33186723 http://dx.doi.org/10.1016/j.neuroimage.2020.117539 Text en This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)
spellingShingle Article
Moeller, Steen
Pisharady, Pramod Kumar
Ramanna, Sudhir
Lenglet, Christophe
Wu, Xiaoping
Dowdle, Logan
Yacoub, Essa
Uğurbil, Kamil
Akçakaya, Mehmet
NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing
title NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing
title_full NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing
title_fullStr NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing
title_full_unstemmed NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing
title_short NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing
title_sort noise reduction with distribution corrected (nordic) pca in dmri with complex-valued parameter-free locally low-rank processing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7881933/
https://www.ncbi.nlm.nih.gov/pubmed/33186723
http://dx.doi.org/10.1016/j.neuroimage.2020.117539
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