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Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom

OBJECTIVE: The objective of this study was to evaluate the robustness and reproducibility of computed tomography‐based texture analysis (CTTA) metrics extracted from CT images of a customized texture phantom built for assessing the association of texture metrics to three‐dimensional (3D) printed pro...

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Autores principales: Varghese, Bino A., Hwang, Darryl, Cen, Steven Y., Lei, Xiaomeng, Levy, Joshua, Desai, Bhushan, Goodenough, David J., Duddalwar, Vinay A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882093/
https://www.ncbi.nlm.nih.gov/pubmed/33434374
http://dx.doi.org/10.1002/acm2.13162
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author Varghese, Bino A.
Hwang, Darryl
Cen, Steven Y.
Lei, Xiaomeng
Levy, Joshua
Desai, Bhushan
Goodenough, David J.
Duddalwar, Vinay A.
author_facet Varghese, Bino A.
Hwang, Darryl
Cen, Steven Y.
Lei, Xiaomeng
Levy, Joshua
Desai, Bhushan
Goodenough, David J.
Duddalwar, Vinay A.
author_sort Varghese, Bino A.
collection PubMed
description OBJECTIVE: The objective of this study was to evaluate the robustness and reproducibility of computed tomography‐based texture analysis (CTTA) metrics extracted from CT images of a customized texture phantom built for assessing the association of texture metrics to three‐dimensional (3D) printed progressively increasing textural heterogeneity. MATERIALS AND METHODS: A custom‐built 3D‐printed texture phantom comprising of six texture patterns was used to evaluate the robustness and reproducibility of a radiomics panel under a variety of routine abdominal imaging protocols. The phantom was scanned on four CT scanners (Philips, Canon, GE, and Siemens) to assess reproducibility. The robustness assessment was conducted by imaging the texture phantom across different CT imaging parameters such as slice thickness, field of view (FOV), tube voltage, and tube current for each scanner. The texture panel comprised of 387 features belonging to 15 subgroups of texture extraction methods (e.g., Gray‐level Co‐occurrence Matrix: GLCM). Twelve unique image settings were tested on all the four scanners (e.g., FOV125). Interclass correlation two‐way mixed with absolute agreement (ICC3) was used to assess the robustness and reproducibility of radiomic features. Linear regression was used to test the association between change in radiomic features and increased texture heterogeneity. Results were summarized in heat maps. RESULTS: A total of 5612 (23.2%) of 24 090 features showed excellent robustness and reproducibility (ICC ≥ 0.9). Intensity, GLCM 3D, and gray‐level run length matrix (GLRLM) 3D features showed best performance. Among imaging variables, changes in slice thickness affected all metrics more intensely compared to other imaging variables in reducing the ICC3. From the analysis of linear trend effect of the CTTA metrics, the top three metrics with high linear correlations across all scanners and scanning settings were from the GLRLM 2D/3D and discrete cosine transform (DCT) texture family. CONCLUSION: The choice of scanner and imaging protocols affect texture metrics. Furthermore, not all CTTA metrics have a linear association with linearly varying texture patterns.
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spelling pubmed-78820932021-02-19 Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom Varghese, Bino A. Hwang, Darryl Cen, Steven Y. Lei, Xiaomeng Levy, Joshua Desai, Bhushan Goodenough, David J. Duddalwar, Vinay A. J Appl Clin Med Phys Radiation Oncology Physics OBJECTIVE: The objective of this study was to evaluate the robustness and reproducibility of computed tomography‐based texture analysis (CTTA) metrics extracted from CT images of a customized texture phantom built for assessing the association of texture metrics to three‐dimensional (3D) printed progressively increasing textural heterogeneity. MATERIALS AND METHODS: A custom‐built 3D‐printed texture phantom comprising of six texture patterns was used to evaluate the robustness and reproducibility of a radiomics panel under a variety of routine abdominal imaging protocols. The phantom was scanned on four CT scanners (Philips, Canon, GE, and Siemens) to assess reproducibility. The robustness assessment was conducted by imaging the texture phantom across different CT imaging parameters such as slice thickness, field of view (FOV), tube voltage, and tube current for each scanner. The texture panel comprised of 387 features belonging to 15 subgroups of texture extraction methods (e.g., Gray‐level Co‐occurrence Matrix: GLCM). Twelve unique image settings were tested on all the four scanners (e.g., FOV125). Interclass correlation two‐way mixed with absolute agreement (ICC3) was used to assess the robustness and reproducibility of radiomic features. Linear regression was used to test the association between change in radiomic features and increased texture heterogeneity. Results were summarized in heat maps. RESULTS: A total of 5612 (23.2%) of 24 090 features showed excellent robustness and reproducibility (ICC ≥ 0.9). Intensity, GLCM 3D, and gray‐level run length matrix (GLRLM) 3D features showed best performance. Among imaging variables, changes in slice thickness affected all metrics more intensely compared to other imaging variables in reducing the ICC3. From the analysis of linear trend effect of the CTTA metrics, the top three metrics with high linear correlations across all scanners and scanning settings were from the GLRLM 2D/3D and discrete cosine transform (DCT) texture family. CONCLUSION: The choice of scanner and imaging protocols affect texture metrics. Furthermore, not all CTTA metrics have a linear association with linearly varying texture patterns. John Wiley and Sons Inc. 2021-01-12 /pmc/articles/PMC7882093/ /pubmed/33434374 http://dx.doi.org/10.1002/acm2.13162 Text en © 2021 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, Inc. on behalf of American Association of Physicists in Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Radiation Oncology Physics
Varghese, Bino A.
Hwang, Darryl
Cen, Steven Y.
Lei, Xiaomeng
Levy, Joshua
Desai, Bhushan
Goodenough, David J.
Duddalwar, Vinay A.
Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom
title Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom
title_full Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom
title_fullStr Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom
title_full_unstemmed Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom
title_short Identification of robust and reproducible CT‐texture metrics using a customized 3D‐printed texture phantom
title_sort identification of robust and reproducible ct‐texture metrics using a customized 3d‐printed texture phantom
topic Radiation Oncology Physics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882093/
https://www.ncbi.nlm.nih.gov/pubmed/33434374
http://dx.doi.org/10.1002/acm2.13162
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