Cargando…

Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease

World is familiar with the viral pathogen Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2). The principle working enzymes of SARS CoV-2 have been identified as main proteases 3Cl pro which act as main regulators for SARS infection. The need for therapy is required immediately pertaining...

Descripción completa

Detalles Bibliográficos
Autores principales: Hejazi, Iram Iqbal, Beg, Md Amjad, Imam, Md Ali, Athar, Fareeda, Islam, Asimul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882218/
https://www.ncbi.nlm.nih.gov/pubmed/33592201
http://dx.doi.org/10.1016/j.fct.2021.112057
_version_ 1783651016205402112
author Hejazi, Iram Iqbal
Beg, Md Amjad
Imam, Md Ali
Athar, Fareeda
Islam, Asimul
author_facet Hejazi, Iram Iqbal
Beg, Md Amjad
Imam, Md Ali
Athar, Fareeda
Islam, Asimul
author_sort Hejazi, Iram Iqbal
collection PubMed
description World is familiar with the viral pathogen Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2). The principle working enzymes of SARS CoV-2 have been identified as main proteases 3Cl pro which act as main regulators for SARS infection. The need for therapy is required immediately pertaining to the vulnerable conditions. Protein-ligand studies are imperative for understanding the functioning of biological interactions as they are crucial in providing a hypothetical origin for the design and unearthing of novel drug targets. Phytoconstituents from Glycyrrhiza glabra, earlier reported to be anticancerous in nature were used as repurposed drugs against SARS CoV-2 main protease 3Clpro. We analyzed the molecular interactions of protein-phytocompounds, by AutoDock Vina 4.2 tools. The best interactions of each algorithm were subjected to molecular dynamic (MD) simulations to have an insight of the molecular dynamic mechanisms involved. Selected phytoconstituents gave a good score for binding affinity with the main protease 6LU7 of SARS CoV-2 as compared to the antiviral drugs already being used in the disease therapy. DehydroglyasperinC(-8.7,-8.1,-6.7,-7.1)kcal/mol, Licochalcone D(-8.4,-8.2,-7.1,-7.9) kcal/mol, Liquiritin(-8.6,-9.0,-7.2,-7.8) kcal/mol have showed energy interactions with 3Clpro better than many FDA approved repurposed drugs; Remdesvir, Favipiravir, and Hydroxychloroquine. MD Simulation also corelates our findings for molecular docking studies.
format Online
Article
Text
id pubmed-7882218
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-78822182021-02-16 Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease Hejazi, Iram Iqbal Beg, Md Amjad Imam, Md Ali Athar, Fareeda Islam, Asimul Food Chem Toxicol Article World is familiar with the viral pathogen Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2). The principle working enzymes of SARS CoV-2 have been identified as main proteases 3Cl pro which act as main regulators for SARS infection. The need for therapy is required immediately pertaining to the vulnerable conditions. Protein-ligand studies are imperative for understanding the functioning of biological interactions as they are crucial in providing a hypothetical origin for the design and unearthing of novel drug targets. Phytoconstituents from Glycyrrhiza glabra, earlier reported to be anticancerous in nature were used as repurposed drugs against SARS CoV-2 main protease 3Clpro. We analyzed the molecular interactions of protein-phytocompounds, by AutoDock Vina 4.2 tools. The best interactions of each algorithm were subjected to molecular dynamic (MD) simulations to have an insight of the molecular dynamic mechanisms involved. Selected phytoconstituents gave a good score for binding affinity with the main protease 6LU7 of SARS CoV-2 as compared to the antiviral drugs already being used in the disease therapy. DehydroglyasperinC(-8.7,-8.1,-6.7,-7.1)kcal/mol, Licochalcone D(-8.4,-8.2,-7.1,-7.9) kcal/mol, Liquiritin(-8.6,-9.0,-7.2,-7.8) kcal/mol have showed energy interactions with 3Clpro better than many FDA approved repurposed drugs; Remdesvir, Favipiravir, and Hydroxychloroquine. MD Simulation also corelates our findings for molecular docking studies. Elsevier Ltd. 2021-04 2021-02-14 /pmc/articles/PMC7882218/ /pubmed/33592201 http://dx.doi.org/10.1016/j.fct.2021.112057 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Hejazi, Iram Iqbal
Beg, Md Amjad
Imam, Md Ali
Athar, Fareeda
Islam, Asimul
Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease
title Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease
title_full Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease
title_fullStr Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease
title_full_unstemmed Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease
title_short Glossary of phytoconstituents: Can these be repurposed against SARS CoV-2? A quick in silico screening of various phytoconstituents from plant Glycyrrhiza glabra with SARS CoV-2 main protease
title_sort glossary of phytoconstituents: can these be repurposed against sars cov-2? a quick in silico screening of various phytoconstituents from plant glycyrrhiza glabra with sars cov-2 main protease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882218/
https://www.ncbi.nlm.nih.gov/pubmed/33592201
http://dx.doi.org/10.1016/j.fct.2021.112057
work_keys_str_mv AT hejaziiramiqbal glossaryofphytoconstituentscantheseberepurposedagainstsarscov2aquickinsilicoscreeningofvariousphytoconstituentsfromplantglycyrrhizaglabrawithsarscov2mainprotease
AT begmdamjad glossaryofphytoconstituentscantheseberepurposedagainstsarscov2aquickinsilicoscreeningofvariousphytoconstituentsfromplantglycyrrhizaglabrawithsarscov2mainprotease
AT imammdali glossaryofphytoconstituentscantheseberepurposedagainstsarscov2aquickinsilicoscreeningofvariousphytoconstituentsfromplantglycyrrhizaglabrawithsarscov2mainprotease
AT atharfareeda glossaryofphytoconstituentscantheseberepurposedagainstsarscov2aquickinsilicoscreeningofvariousphytoconstituentsfromplantglycyrrhizaglabrawithsarscov2mainprotease
AT islamasimul glossaryofphytoconstituentscantheseberepurposedagainstsarscov2aquickinsilicoscreeningofvariousphytoconstituentsfromplantglycyrrhizaglabrawithsarscov2mainprotease