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Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid

1. With the increase in global trade and warming patterns, the movement, introduction, and establishment of non‐native insect species has increased. A rapid and effective early detection biosurveillance program to identify species of concern is needed to reduce future impacts and costs associated wi...

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Autores principales: Young, Robert G., Milián‐García, Yoamel, Yu, Jaeju, Bullas‐Appleton, Erin, Hanner, Robert H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882945/
https://www.ncbi.nlm.nih.gov/pubmed/33613989
http://dx.doi.org/10.1002/ece3.7113
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author Young, Robert G.
Milián‐García, Yoamel
Yu, Jaeju
Bullas‐Appleton, Erin
Hanner, Robert H.
author_facet Young, Robert G.
Milián‐García, Yoamel
Yu, Jaeju
Bullas‐Appleton, Erin
Hanner, Robert H.
author_sort Young, Robert G.
collection PubMed
description 1. With the increase in global trade and warming patterns, the movement, introduction, and establishment of non‐native insect species has increased. A rapid and effective early detection biosurveillance program to identify species of concern is needed to reduce future impacts and costs associated with introduced non‐native species. One of the challenges facing insect surveillance trapping methods is the sheer volume of individual specimens in the collections. Although molecular identification methods are improving, they currently have limitations (e.g., destructive processing of specimens) and a protocol addressing these limitations can support regulatory applications that need morphological evidence to corroborate molecular data. 2. The novel protocol presented here uses a metabarcoding approach to amplify environmental DNA from a saturated salt solution trap fluid, which retains trap specimens for downstream morphological identifications. The use of a saturated salt solution to preserve specimens in traps addresses issues with the high evaporation rate of ethanol in traps, and public safety concerns with other fluid preservation options with unattended traps in public settings. 3. Using a metabarcoding approach, a 407‐nucleotide segment of the cytochrome c oxidase subunit 1 (COI) animal barcode region was successfully amplified from Lindgren funnel trap collection fluids. These traps were placed in forested areas to survey for wood‐boring beetles of regulatory concern. Our results displayed successful amplification of target taxa, including the molecular identification of the Japanese Beetle Popillia japonica, a species regulated in Canada. A second species, Anisandrus maiche, recently introduced to North America, was identified in every trap. The genus Lymantria, which contains numerous species of concern to North American woodlands, was also detected. Also, there were six other species identified of interest due to their potential impacts on native and crop flora and fauna. 4. Our results show how this protocol can be used as an efficient method for the surveillance of insects using a trap with a saturated salt solution and eDNA metabarcoding to detect species of regulatory concern.
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spelling pubmed-78829452021-02-19 Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid Young, Robert G. Milián‐García, Yoamel Yu, Jaeju Bullas‐Appleton, Erin Hanner, Robert H. Ecol Evol Original Research 1. With the increase in global trade and warming patterns, the movement, introduction, and establishment of non‐native insect species has increased. A rapid and effective early detection biosurveillance program to identify species of concern is needed to reduce future impacts and costs associated with introduced non‐native species. One of the challenges facing insect surveillance trapping methods is the sheer volume of individual specimens in the collections. Although molecular identification methods are improving, they currently have limitations (e.g., destructive processing of specimens) and a protocol addressing these limitations can support regulatory applications that need morphological evidence to corroborate molecular data. 2. The novel protocol presented here uses a metabarcoding approach to amplify environmental DNA from a saturated salt solution trap fluid, which retains trap specimens for downstream morphological identifications. The use of a saturated salt solution to preserve specimens in traps addresses issues with the high evaporation rate of ethanol in traps, and public safety concerns with other fluid preservation options with unattended traps in public settings. 3. Using a metabarcoding approach, a 407‐nucleotide segment of the cytochrome c oxidase subunit 1 (COI) animal barcode region was successfully amplified from Lindgren funnel trap collection fluids. These traps were placed in forested areas to survey for wood‐boring beetles of regulatory concern. Our results displayed successful amplification of target taxa, including the molecular identification of the Japanese Beetle Popillia japonica, a species regulated in Canada. A second species, Anisandrus maiche, recently introduced to North America, was identified in every trap. The genus Lymantria, which contains numerous species of concern to North American woodlands, was also detected. Also, there were six other species identified of interest due to their potential impacts on native and crop flora and fauna. 4. Our results show how this protocol can be used as an efficient method for the surveillance of insects using a trap with a saturated salt solution and eDNA metabarcoding to detect species of regulatory concern. John Wiley and Sons Inc. 2021-01-28 /pmc/articles/PMC7882945/ /pubmed/33613989 http://dx.doi.org/10.1002/ece3.7113 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Young, Robert G.
Milián‐García, Yoamel
Yu, Jaeju
Bullas‐Appleton, Erin
Hanner, Robert H.
Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid
title Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid
title_full Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid
title_fullStr Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid
title_full_unstemmed Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid
title_short Biosurveillance for invasive insect pest species using an environmental DNA metabarcoding approach and a high salt trap collection fluid
title_sort biosurveillance for invasive insect pest species using an environmental dna metabarcoding approach and a high salt trap collection fluid
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882945/
https://www.ncbi.nlm.nih.gov/pubmed/33613989
http://dx.doi.org/10.1002/ece3.7113
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