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On‐site genetic analysis for species identification using lab‐on‐a‐chip

This paper presents a microfluidic device capable of performing genetic analysis on dung samples to identify White Rhinoceros (Ceratotherium simum). The development of a microfluidic device, which can be used in the field, offers a portable and cost‐effective solution for DNA analysis and species id...

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Detalles Bibliográficos
Autores principales: Wimbles, Ryan, Melling, Louise M., Cain, Bradley, Davies, Naomi, Doherty, Jason, Johnson, Bridget, Shaw, Kirsty J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882957/
https://www.ncbi.nlm.nih.gov/pubmed/33613987
http://dx.doi.org/10.1002/ece3.7053
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author Wimbles, Ryan
Melling, Louise M.
Cain, Bradley
Davies, Naomi
Doherty, Jason
Johnson, Bridget
Shaw, Kirsty J.
author_facet Wimbles, Ryan
Melling, Louise M.
Cain, Bradley
Davies, Naomi
Doherty, Jason
Johnson, Bridget
Shaw, Kirsty J.
author_sort Wimbles, Ryan
collection PubMed
description This paper presents a microfluidic device capable of performing genetic analysis on dung samples to identify White Rhinoceros (Ceratotherium simum). The development of a microfluidic device, which can be used in the field, offers a portable and cost‐effective solution for DNA analysis and species identification to aid conservation efforts. Optimization of the DNA extraction processes produced equivalent yields compared to conventional kit‐based methods within just 5 minutes. The use of a color‐changing loop‐mediated isothermal amplification reaction for simultaneous detection of the cytochrome B sequence of C. simum enabled positive results to be obtained within as little as 30 minutes. Field testing was performed at Knowsley Safari to demonstrate real‐world applicability of the microfluidic device for testing of biological samples.
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spelling pubmed-78829572021-02-19 On‐site genetic analysis for species identification using lab‐on‐a‐chip Wimbles, Ryan Melling, Louise M. Cain, Bradley Davies, Naomi Doherty, Jason Johnson, Bridget Shaw, Kirsty J. Ecol Evol Original Research This paper presents a microfluidic device capable of performing genetic analysis on dung samples to identify White Rhinoceros (Ceratotherium simum). The development of a microfluidic device, which can be used in the field, offers a portable and cost‐effective solution for DNA analysis and species identification to aid conservation efforts. Optimization of the DNA extraction processes produced equivalent yields compared to conventional kit‐based methods within just 5 minutes. The use of a color‐changing loop‐mediated isothermal amplification reaction for simultaneous detection of the cytochrome B sequence of C. simum enabled positive results to be obtained within as little as 30 minutes. Field testing was performed at Knowsley Safari to demonstrate real‐world applicability of the microfluidic device for testing of biological samples. John Wiley and Sons Inc. 2021-01-29 /pmc/articles/PMC7882957/ /pubmed/33613987 http://dx.doi.org/10.1002/ece3.7053 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Wimbles, Ryan
Melling, Louise M.
Cain, Bradley
Davies, Naomi
Doherty, Jason
Johnson, Bridget
Shaw, Kirsty J.
On‐site genetic analysis for species identification using lab‐on‐a‐chip
title On‐site genetic analysis for species identification using lab‐on‐a‐chip
title_full On‐site genetic analysis for species identification using lab‐on‐a‐chip
title_fullStr On‐site genetic analysis for species identification using lab‐on‐a‐chip
title_full_unstemmed On‐site genetic analysis for species identification using lab‐on‐a‐chip
title_short On‐site genetic analysis for species identification using lab‐on‐a‐chip
title_sort on‐site genetic analysis for species identification using lab‐on‐a‐chip
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882957/
https://www.ncbi.nlm.nih.gov/pubmed/33613987
http://dx.doi.org/10.1002/ece3.7053
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