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Improved prediction of Canada lynx distribution through regional model transferability and data efficiency

The application of species distribution models (SDMs) to areas outside of where a model was created allows informed decisions across large spatial scales, yet transferability remains a challenge in ecological modeling. We examined how regional variation in animal‐environment relationships influenced...

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Autores principales: Olson, Lucretia E., Bjornlie, Nichole, Hanvey, Gary, Holbrook, Joseph D., Ivan, Jacob S., Jackson, Scott, Kertson, Brian, King, Travis, Lucid, Michael, Murray, Dennis, Naney, Robert, Rohrer, John, Scully, Arthur, Thornton, Daniel, Walker, Zachary, Squires, John R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882975/
https://www.ncbi.nlm.nih.gov/pubmed/33613997
http://dx.doi.org/10.1002/ece3.7157
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author Olson, Lucretia E.
Bjornlie, Nichole
Hanvey, Gary
Holbrook, Joseph D.
Ivan, Jacob S.
Jackson, Scott
Kertson, Brian
King, Travis
Lucid, Michael
Murray, Dennis
Naney, Robert
Rohrer, John
Scully, Arthur
Thornton, Daniel
Walker, Zachary
Squires, John R.
author_facet Olson, Lucretia E.
Bjornlie, Nichole
Hanvey, Gary
Holbrook, Joseph D.
Ivan, Jacob S.
Jackson, Scott
Kertson, Brian
King, Travis
Lucid, Michael
Murray, Dennis
Naney, Robert
Rohrer, John
Scully, Arthur
Thornton, Daniel
Walker, Zachary
Squires, John R.
author_sort Olson, Lucretia E.
collection PubMed
description The application of species distribution models (SDMs) to areas outside of where a model was created allows informed decisions across large spatial scales, yet transferability remains a challenge in ecological modeling. We examined how regional variation in animal‐environment relationships influenced model transferability for Canada lynx (Lynx canadensis), with an additional conservation aim of modeling lynx habitat across the northwestern United States. Simultaneously, we explored the effect of sample size from GPS data on SDM model performance and transferability. We used data from three geographically distinct Canada lynx populations in Washington (n = 17 individuals), Montana (n = 66), and Wyoming (n = 10) from 1996 to 2015. We assessed regional variation in lynx‐environment relationships between these three populations using principal components analysis (PCA). We used ensemble modeling to develop SDMs for each population and all populations combined and assessed model prediction and transferability for each model scenario using withheld data and an extensive independent dataset (n = 650). Finally, we examined GPS data efficiency by testing models created with sample sizes of 5%–100% of the original datasets. PCA results indicated some differences in environmental characteristics between populations; models created from individual populations showed differential transferability based on the populations' similarity in PCA space. Despite population differences, a single model created from all populations performed as well, or better, than each individual population. Model performance was mostly insensitive to GPS sample size, with a plateau in predictive ability reached at ~30% of the total GPS dataset when initial sample size was large. Based on these results, we generated well‐validated spatial predictions of Canada lynx distribution across a large portion of the species' southern range, with precipitation and temperature the primary environmental predictors in the model. We also demonstrated substantial redundancy in our large GPS dataset, with predictive performance insensitive to sample sizes above 30% of the original.
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spelling pubmed-78829752021-02-19 Improved prediction of Canada lynx distribution through regional model transferability and data efficiency Olson, Lucretia E. Bjornlie, Nichole Hanvey, Gary Holbrook, Joseph D. Ivan, Jacob S. Jackson, Scott Kertson, Brian King, Travis Lucid, Michael Murray, Dennis Naney, Robert Rohrer, John Scully, Arthur Thornton, Daniel Walker, Zachary Squires, John R. Ecol Evol Original Research The application of species distribution models (SDMs) to areas outside of where a model was created allows informed decisions across large spatial scales, yet transferability remains a challenge in ecological modeling. We examined how regional variation in animal‐environment relationships influenced model transferability for Canada lynx (Lynx canadensis), with an additional conservation aim of modeling lynx habitat across the northwestern United States. Simultaneously, we explored the effect of sample size from GPS data on SDM model performance and transferability. We used data from three geographically distinct Canada lynx populations in Washington (n = 17 individuals), Montana (n = 66), and Wyoming (n = 10) from 1996 to 2015. We assessed regional variation in lynx‐environment relationships between these three populations using principal components analysis (PCA). We used ensemble modeling to develop SDMs for each population and all populations combined and assessed model prediction and transferability for each model scenario using withheld data and an extensive independent dataset (n = 650). Finally, we examined GPS data efficiency by testing models created with sample sizes of 5%–100% of the original datasets. PCA results indicated some differences in environmental characteristics between populations; models created from individual populations showed differential transferability based on the populations' similarity in PCA space. Despite population differences, a single model created from all populations performed as well, or better, than each individual population. Model performance was mostly insensitive to GPS sample size, with a plateau in predictive ability reached at ~30% of the total GPS dataset when initial sample size was large. Based on these results, we generated well‐validated spatial predictions of Canada lynx distribution across a large portion of the species' southern range, with precipitation and temperature the primary environmental predictors in the model. We also demonstrated substantial redundancy in our large GPS dataset, with predictive performance insensitive to sample sizes above 30% of the original. John Wiley and Sons Inc. 2021-01-24 /pmc/articles/PMC7882975/ /pubmed/33613997 http://dx.doi.org/10.1002/ece3.7157 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd This article has been contributed to by US Government employees and their work is in the public domain in the USA. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Olson, Lucretia E.
Bjornlie, Nichole
Hanvey, Gary
Holbrook, Joseph D.
Ivan, Jacob S.
Jackson, Scott
Kertson, Brian
King, Travis
Lucid, Michael
Murray, Dennis
Naney, Robert
Rohrer, John
Scully, Arthur
Thornton, Daniel
Walker, Zachary
Squires, John R.
Improved prediction of Canada lynx distribution through regional model transferability and data efficiency
title Improved prediction of Canada lynx distribution through regional model transferability and data efficiency
title_full Improved prediction of Canada lynx distribution through regional model transferability and data efficiency
title_fullStr Improved prediction of Canada lynx distribution through regional model transferability and data efficiency
title_full_unstemmed Improved prediction of Canada lynx distribution through regional model transferability and data efficiency
title_short Improved prediction of Canada lynx distribution through regional model transferability and data efficiency
title_sort improved prediction of canada lynx distribution through regional model transferability and data efficiency
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7882975/
https://www.ncbi.nlm.nih.gov/pubmed/33613997
http://dx.doi.org/10.1002/ece3.7157
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