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Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19

PURPOSE: Differentiating COVID-19 from other acute infectious pneumonias rapidly is challenging at present. This study aims to improve the diagnosis of COVID-19 using computed tomography (CT). METHOD: COVID-19 was confirmed mainly by virus nucleic acid testing and epidemiological history according t...

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Autores principales: Wu, Zhiyuan, Li, Li, Jin, Ronghua, Liang, Lianchun, Hu, Zhongjie, Tao, Lixin, Han, Yong, Feng, Wei, Zhou, Di, Li, Weiming, Lu, Qinbin, Liu, Wei, Fang, Liqun, Huang, Jian, Gu, Yu, Li, Hongjun, Guo, Xiuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7883715/
https://www.ncbi.nlm.nih.gov/pubmed/33618207
http://dx.doi.org/10.1016/j.ejrad.2021.109602
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author Wu, Zhiyuan
Li, Li
Jin, Ronghua
Liang, Lianchun
Hu, Zhongjie
Tao, Lixin
Han, Yong
Feng, Wei
Zhou, Di
Li, Weiming
Lu, Qinbin
Liu, Wei
Fang, Liqun
Huang, Jian
Gu, Yu
Li, Hongjun
Guo, Xiuhua
author_facet Wu, Zhiyuan
Li, Li
Jin, Ronghua
Liang, Lianchun
Hu, Zhongjie
Tao, Lixin
Han, Yong
Feng, Wei
Zhou, Di
Li, Weiming
Lu, Qinbin
Liu, Wei
Fang, Liqun
Huang, Jian
Gu, Yu
Li, Hongjun
Guo, Xiuhua
author_sort Wu, Zhiyuan
collection PubMed
description PURPOSE: Differentiating COVID-19 from other acute infectious pneumonias rapidly is challenging at present. This study aims to improve the diagnosis of COVID-19 using computed tomography (CT). METHOD: COVID-19 was confirmed mainly by virus nucleic acid testing and epidemiological history according to WHO interim guidance, while other infectious pneumonias were diagnosed by antigen testing. The texture features were extracted from CT images by two radiologists with 5 years of work experience using modified wavelet transform and matrix computation analyses. The random forest (RF) classifier was applied to identify COVID-19 patients and images. RESULTS: We retrospectively analysed the data of 95 individuals (291 images) with COVID-19 and 96 individuals (279 images) with other acute infectious pneumonias, including 50 individuals (160 images) with influenza A/B. In total, 6 texture features showed a positive association with COVID-19, while 4 features were negatively associated. The mean AUROC, accuracy, sensitivity, and specificity values of the 5-fold test sets were 0.800, 0.722, 0.770, and 0.680 for image classification and 0.858, 0.826, 0.809, and 0.842 for individual classification, respectively. The feature ‘Correlation’ contributed most both at the image level and individual level, even compared with the clinical factors. In addition, the texture features could discriminate COVID-19 from influenza A/B, with an AUROC of 0.883 for images and 0.957 for individuals. CONCLUSIONS: The developed texture feature-based RF classifier could assist in the diagnosis of COVID-19, which could be a rapid screening tool in the era of pandemic.
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spelling pubmed-78837152021-02-16 Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19 Wu, Zhiyuan Li, Li Jin, Ronghua Liang, Lianchun Hu, Zhongjie Tao, Lixin Han, Yong Feng, Wei Zhou, Di Li, Weiming Lu, Qinbin Liu, Wei Fang, Liqun Huang, Jian Gu, Yu Li, Hongjun Guo, Xiuhua Eur J Radiol Article PURPOSE: Differentiating COVID-19 from other acute infectious pneumonias rapidly is challenging at present. This study aims to improve the diagnosis of COVID-19 using computed tomography (CT). METHOD: COVID-19 was confirmed mainly by virus nucleic acid testing and epidemiological history according to WHO interim guidance, while other infectious pneumonias were diagnosed by antigen testing. The texture features were extracted from CT images by two radiologists with 5 years of work experience using modified wavelet transform and matrix computation analyses. The random forest (RF) classifier was applied to identify COVID-19 patients and images. RESULTS: We retrospectively analysed the data of 95 individuals (291 images) with COVID-19 and 96 individuals (279 images) with other acute infectious pneumonias, including 50 individuals (160 images) with influenza A/B. In total, 6 texture features showed a positive association with COVID-19, while 4 features were negatively associated. The mean AUROC, accuracy, sensitivity, and specificity values of the 5-fold test sets were 0.800, 0.722, 0.770, and 0.680 for image classification and 0.858, 0.826, 0.809, and 0.842 for individual classification, respectively. The feature ‘Correlation’ contributed most both at the image level and individual level, even compared with the clinical factors. In addition, the texture features could discriminate COVID-19 from influenza A/B, with an AUROC of 0.883 for images and 0.957 for individuals. CONCLUSIONS: The developed texture feature-based RF classifier could assist in the diagnosis of COVID-19, which could be a rapid screening tool in the era of pandemic. Elsevier B.V. 2021-04 2021-02-15 /pmc/articles/PMC7883715/ /pubmed/33618207 http://dx.doi.org/10.1016/j.ejrad.2021.109602 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Wu, Zhiyuan
Li, Li
Jin, Ronghua
Liang, Lianchun
Hu, Zhongjie
Tao, Lixin
Han, Yong
Feng, Wei
Zhou, Di
Li, Weiming
Lu, Qinbin
Liu, Wei
Fang, Liqun
Huang, Jian
Gu, Yu
Li, Hongjun
Guo, Xiuhua
Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19
title Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19
title_full Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19
title_fullStr Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19
title_full_unstemmed Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19
title_short Texture feature-based machine learning classifier could assist in the diagnosis of COVID-19
title_sort texture feature-based machine learning classifier could assist in the diagnosis of covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7883715/
https://www.ncbi.nlm.nih.gov/pubmed/33618207
http://dx.doi.org/10.1016/j.ejrad.2021.109602
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