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Transferred-Rotational-Echo Double Resonance
[Image: see text] Internuclear distance determination is the foundation for NMR-based structure calculation. However, high-precision distance measurement is a laborious process requiring lengthy data acquisitions due to the large set of multidimensional spectra needed at different mixing times. This...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884007/ https://www.ncbi.nlm.nih.gov/pubmed/33464081 http://dx.doi.org/10.1021/acs.jpca.0c09033 |
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author | Zhang, Xizhou Cecily Forster, Marcel C. Nimerovsky, Evgeny Movellan, Kumar Tekwani Andreas, Loren B. |
author_facet | Zhang, Xizhou Cecily Forster, Marcel C. Nimerovsky, Evgeny Movellan, Kumar Tekwani Andreas, Loren B. |
author_sort | Zhang, Xizhou Cecily |
collection | PubMed |
description | [Image: see text] Internuclear distance determination is the foundation for NMR-based structure calculation. However, high-precision distance measurement is a laborious process requiring lengthy data acquisitions due to the large set of multidimensional spectra needed at different mixing times. This prevents application to large or challenging molecular systems. Here, we present a new approach, transferred-rotational-echo double resonance (TREDOR), a heteronuclear transfer method in which we simultaneously detect both starting and transferred signals in a single spectrum. This co-acquisition is used to compensate for coherence decay, resulting in accurate and precise distance determination by a single parameter fit using a single spectrum recorded at an ideal mixing time. We showcase TREDOR with the microcrystalline SH3 protein using 3D spectra to resolve resonances. By combining the measured N–C and H–C distances, we calculate the structure of SH3, which converges to the correct fold, with a root-mean-square deviation of 2.1 Å compared to a reference X-ray structure. The TREDOR data used in the structure calculation were acquired in only 4 days on a 600 MHz instrument. This is achieved due to the more than 2-fold time saving afforded by co-acquisition of additional information and demonstrates TREDOR as a fast and straightforward method for determining structures via magic-angle spinning NMR. |
format | Online Article Text |
id | pubmed-7884007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-78840072021-02-16 Transferred-Rotational-Echo Double Resonance Zhang, Xizhou Cecily Forster, Marcel C. Nimerovsky, Evgeny Movellan, Kumar Tekwani Andreas, Loren B. J Phys Chem A [Image: see text] Internuclear distance determination is the foundation for NMR-based structure calculation. However, high-precision distance measurement is a laborious process requiring lengthy data acquisitions due to the large set of multidimensional spectra needed at different mixing times. This prevents application to large or challenging molecular systems. Here, we present a new approach, transferred-rotational-echo double resonance (TREDOR), a heteronuclear transfer method in which we simultaneously detect both starting and transferred signals in a single spectrum. This co-acquisition is used to compensate for coherence decay, resulting in accurate and precise distance determination by a single parameter fit using a single spectrum recorded at an ideal mixing time. We showcase TREDOR with the microcrystalline SH3 protein using 3D spectra to resolve resonances. By combining the measured N–C and H–C distances, we calculate the structure of SH3, which converges to the correct fold, with a root-mean-square deviation of 2.1 Å compared to a reference X-ray structure. The TREDOR data used in the structure calculation were acquired in only 4 days on a 600 MHz instrument. This is achieved due to the more than 2-fold time saving afforded by co-acquisition of additional information and demonstrates TREDOR as a fast and straightforward method for determining structures via magic-angle spinning NMR. American Chemical Society 2021-01-19 2021-01-28 /pmc/articles/PMC7884007/ /pubmed/33464081 http://dx.doi.org/10.1021/acs.jpca.0c09033 Text en © 2021 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Zhang, Xizhou Cecily Forster, Marcel C. Nimerovsky, Evgeny Movellan, Kumar Tekwani Andreas, Loren B. Transferred-Rotational-Echo Double Resonance |
title | Transferred-Rotational-Echo Double Resonance |
title_full | Transferred-Rotational-Echo Double Resonance |
title_fullStr | Transferred-Rotational-Echo Double Resonance |
title_full_unstemmed | Transferred-Rotational-Echo Double Resonance |
title_short | Transferred-Rotational-Echo Double Resonance |
title_sort | transferred-rotational-echo double resonance |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884007/ https://www.ncbi.nlm.nih.gov/pubmed/33464081 http://dx.doi.org/10.1021/acs.jpca.0c09033 |
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