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Crick Wobble and Superwobble in Standard Genetic Code Evolution
Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too so...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer US
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884361/ https://www.ncbi.nlm.nih.gov/pubmed/33409542 http://dx.doi.org/10.1007/s00239-020-09985-7 |
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author | Yarus, Michael |
author_facet | Yarus, Michael |
author_sort | Yarus, Michael |
collection | PubMed |
description | Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too soon, or it will inhibit encoding and more decisively, obstruct evolution of full coding tables. However, these prior results assumed Crick wobble, NN U/C and NN A/G, read by a single adaptor RNA. Superwobble translates NN U/C/A/G codons, using one adaptor RNA with an unmodified 5′ anticodon U (appropriate to earliest coding) in modern mitochondria, plastids, and mycoplasma. Assuming the SGC was selected when evolving codes most resembled it, characteristics of the critical selection events can be calculated. For example, continuous superwobble infrequently evolves SGC-like coding tables. So, continuous superwobble is a very improbable origin hypothesis. In contrast, late-arising superwobble shares late Crick wobble’s frequent resemblance to SGC order. Thus late superwobble is possible, but yields SGC-like assignments less frequently than late Crick wobble. Ancient coding ambiguity, most simply, arose from Crick wobble alone. This is consistent with SGC assignments to NAN codons. |
format | Online Article Text |
id | pubmed-7884361 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-78843612021-02-25 Crick Wobble and Superwobble in Standard Genetic Code Evolution Yarus, Michael J Mol Evol Original Article Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too soon, or it will inhibit encoding and more decisively, obstruct evolution of full coding tables. However, these prior results assumed Crick wobble, NN U/C and NN A/G, read by a single adaptor RNA. Superwobble translates NN U/C/A/G codons, using one adaptor RNA with an unmodified 5′ anticodon U (appropriate to earliest coding) in modern mitochondria, plastids, and mycoplasma. Assuming the SGC was selected when evolving codes most resembled it, characteristics of the critical selection events can be calculated. For example, continuous superwobble infrequently evolves SGC-like coding tables. So, continuous superwobble is a very improbable origin hypothesis. In contrast, late-arising superwobble shares late Crick wobble’s frequent resemblance to SGC order. Thus late superwobble is possible, but yields SGC-like assignments less frequently than late Crick wobble. Ancient coding ambiguity, most simply, arose from Crick wobble alone. This is consistent with SGC assignments to NAN codons. Springer US 2021-01-07 2021 /pmc/articles/PMC7884361/ /pubmed/33409542 http://dx.doi.org/10.1007/s00239-020-09985-7 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Original Article Yarus, Michael Crick Wobble and Superwobble in Standard Genetic Code Evolution |
title | Crick Wobble and Superwobble in Standard Genetic Code Evolution |
title_full | Crick Wobble and Superwobble in Standard Genetic Code Evolution |
title_fullStr | Crick Wobble and Superwobble in Standard Genetic Code Evolution |
title_full_unstemmed | Crick Wobble and Superwobble in Standard Genetic Code Evolution |
title_short | Crick Wobble and Superwobble in Standard Genetic Code Evolution |
title_sort | crick wobble and superwobble in standard genetic code evolution |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884361/ https://www.ncbi.nlm.nih.gov/pubmed/33409542 http://dx.doi.org/10.1007/s00239-020-09985-7 |
work_keys_str_mv | AT yarusmichael crickwobbleandsuperwobbleinstandardgeneticcodeevolution |