Cargando…

Crick Wobble and Superwobble in Standard Genetic Code Evolution

Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too so...

Descripción completa

Detalles Bibliográficos
Autor principal: Yarus, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884361/
https://www.ncbi.nlm.nih.gov/pubmed/33409542
http://dx.doi.org/10.1007/s00239-020-09985-7
_version_ 1783651398509920256
author Yarus, Michael
author_facet Yarus, Michael
author_sort Yarus, Michael
collection PubMed
description Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too soon, or it will inhibit encoding and more decisively, obstruct evolution of full coding tables. However, these prior results assumed Crick wobble, NN U/C and NN A/G, read by a single adaptor RNA. Superwobble translates NN U/C/A/G codons, using one adaptor RNA with an unmodified 5′ anticodon U (appropriate to earliest coding) in modern mitochondria, plastids, and mycoplasma. Assuming the SGC was selected when evolving codes most resembled it, characteristics of the critical selection events can be calculated. For example, continuous superwobble infrequently evolves SGC-like coding tables. So, continuous superwobble is a very improbable origin hypothesis. In contrast, late-arising superwobble shares late Crick wobble’s frequent resemblance to SGC order. Thus late superwobble is possible, but yields SGC-like assignments less frequently than late Crick wobble. Ancient coding ambiguity, most simply, arose from Crick wobble alone. This is consistent with SGC assignments to NAN codons.
format Online
Article
Text
id pubmed-7884361
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-78843612021-02-25 Crick Wobble and Superwobble in Standard Genetic Code Evolution Yarus, Michael J Mol Evol Original Article Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too soon, or it will inhibit encoding and more decisively, obstruct evolution of full coding tables. However, these prior results assumed Crick wobble, NN U/C and NN A/G, read by a single adaptor RNA. Superwobble translates NN U/C/A/G codons, using one adaptor RNA with an unmodified 5′ anticodon U (appropriate to earliest coding) in modern mitochondria, plastids, and mycoplasma. Assuming the SGC was selected when evolving codes most resembled it, characteristics of the critical selection events can be calculated. For example, continuous superwobble infrequently evolves SGC-like coding tables. So, continuous superwobble is a very improbable origin hypothesis. In contrast, late-arising superwobble shares late Crick wobble’s frequent resemblance to SGC order. Thus late superwobble is possible, but yields SGC-like assignments less frequently than late Crick wobble. Ancient coding ambiguity, most simply, arose from Crick wobble alone. This is consistent with SGC assignments to NAN codons. Springer US 2021-01-07 2021 /pmc/articles/PMC7884361/ /pubmed/33409542 http://dx.doi.org/10.1007/s00239-020-09985-7 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Article
Yarus, Michael
Crick Wobble and Superwobble in Standard Genetic Code Evolution
title Crick Wobble and Superwobble in Standard Genetic Code Evolution
title_full Crick Wobble and Superwobble in Standard Genetic Code Evolution
title_fullStr Crick Wobble and Superwobble in Standard Genetic Code Evolution
title_full_unstemmed Crick Wobble and Superwobble in Standard Genetic Code Evolution
title_short Crick Wobble and Superwobble in Standard Genetic Code Evolution
title_sort crick wobble and superwobble in standard genetic code evolution
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884361/
https://www.ncbi.nlm.nih.gov/pubmed/33409542
http://dx.doi.org/10.1007/s00239-020-09985-7
work_keys_str_mv AT yarusmichael crickwobbleandsuperwobbleinstandardgeneticcodeevolution