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Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI

Sarcomatoid differentiation in RCC (sRCC) is associated with a poor prognosis, necessitating more aggressive management than RCC without sarcomatoid components (nsRCC). Since suspected renal cell carcinoma (RCC) tumors are not routinely biopsied for histologic evaluation, there is a clinical need fo...

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Autores principales: Mazin, Asim, Hawkins, Samuel H., Stringfield, Olya, Dhillon, Jasreman, Manley, Brandon J., Jeong, Daniel K., Raghunand, Natarajan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884398/
https://www.ncbi.nlm.nih.gov/pubmed/33589715
http://dx.doi.org/10.1038/s41598-021-83271-4
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author Mazin, Asim
Hawkins, Samuel H.
Stringfield, Olya
Dhillon, Jasreman
Manley, Brandon J.
Jeong, Daniel K.
Raghunand, Natarajan
author_facet Mazin, Asim
Hawkins, Samuel H.
Stringfield, Olya
Dhillon, Jasreman
Manley, Brandon J.
Jeong, Daniel K.
Raghunand, Natarajan
author_sort Mazin, Asim
collection PubMed
description Sarcomatoid differentiation in RCC (sRCC) is associated with a poor prognosis, necessitating more aggressive management than RCC without sarcomatoid components (nsRCC). Since suspected renal cell carcinoma (RCC) tumors are not routinely biopsied for histologic evaluation, there is a clinical need for a non-invasive method to detect sarcomatoid differentiation pre-operatively. We utilized unsupervised self-organizing map (SOM) and supervised Learning Vector Quantizer (LVQ) machine learning to classify RCC tumors on T2-weighted, non-contrast T1-weighted fat-saturated, contrast-enhanced arterial-phase T1-weighted fat-saturated, and contrast-enhanced venous-phase T1-weighted fat-saturated MRI images. The SOM was trained on 8 nsRCC and 8 sRCC tumors, and used to compute Activation Maps for each training, validation (3 nsRCC and 3 sRCC), and test (5 nsRCC and 5 sRCC) tumor. The LVQ classifier was trained and optimized on Activation Maps from the 22 training and validation cohort tumors, and tested on Activation Maps of the 10 unseen test tumors. In this preliminary study, the SOM-LVQ model achieved a hold-out testing accuracy of 70% in the task of identifying sarcomatoid differentiation in RCC on standard multiparameter MRI (mpMRI) images. We have demonstrated a combined SOM-LVQ machine learning approach that is suitable for analysis of limited mpMRI datasets for the task of differential diagnosis.
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spelling pubmed-78843982021-02-16 Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI Mazin, Asim Hawkins, Samuel H. Stringfield, Olya Dhillon, Jasreman Manley, Brandon J. Jeong, Daniel K. Raghunand, Natarajan Sci Rep Article Sarcomatoid differentiation in RCC (sRCC) is associated with a poor prognosis, necessitating more aggressive management than RCC without sarcomatoid components (nsRCC). Since suspected renal cell carcinoma (RCC) tumors are not routinely biopsied for histologic evaluation, there is a clinical need for a non-invasive method to detect sarcomatoid differentiation pre-operatively. We utilized unsupervised self-organizing map (SOM) and supervised Learning Vector Quantizer (LVQ) machine learning to classify RCC tumors on T2-weighted, non-contrast T1-weighted fat-saturated, contrast-enhanced arterial-phase T1-weighted fat-saturated, and contrast-enhanced venous-phase T1-weighted fat-saturated MRI images. The SOM was trained on 8 nsRCC and 8 sRCC tumors, and used to compute Activation Maps for each training, validation (3 nsRCC and 3 sRCC), and test (5 nsRCC and 5 sRCC) tumor. The LVQ classifier was trained and optimized on Activation Maps from the 22 training and validation cohort tumors, and tested on Activation Maps of the 10 unseen test tumors. In this preliminary study, the SOM-LVQ model achieved a hold-out testing accuracy of 70% in the task of identifying sarcomatoid differentiation in RCC on standard multiparameter MRI (mpMRI) images. We have demonstrated a combined SOM-LVQ machine learning approach that is suitable for analysis of limited mpMRI datasets for the task of differential diagnosis. Nature Publishing Group UK 2021-02-15 /pmc/articles/PMC7884398/ /pubmed/33589715 http://dx.doi.org/10.1038/s41598-021-83271-4 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mazin, Asim
Hawkins, Samuel H.
Stringfield, Olya
Dhillon, Jasreman
Manley, Brandon J.
Jeong, Daniel K.
Raghunand, Natarajan
Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI
title Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI
title_full Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI
title_fullStr Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI
title_full_unstemmed Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI
title_short Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI
title_sort identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric mri
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884398/
https://www.ncbi.nlm.nih.gov/pubmed/33589715
http://dx.doi.org/10.1038/s41598-021-83271-4
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