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Diversity of SARS-CoV-2 isolates driven by pressure and health index
One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cambridge University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884664/ https://www.ncbi.nlm.nih.gov/pubmed/33517929 http://dx.doi.org/10.1017/S0950268821000248 |
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author | Singh, R. K. Sanayaima Malik, Md. Zubbair Singh, R. K. Brojen |
author_facet | Singh, R. K. Sanayaima Malik, Md. Zubbair Singh, R. K. Brojen |
author_sort | Singh, R. K. Sanayaima |
collection | PubMed |
description | One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of the root causes of the fast Covid-19 pandemic and is strongly affected by pressure and health index of the hosts inhabited regions. The calculated mutation rate (m(r)) is observed to be maximum at a particular pressure, beyond which m(r) maintains diversity. Hurst exponent and fractal dimension are found to be optimal at a critical pressure (Pm), whereas, for P > Pm and P < Pm, we found rich genome diversity relating to complicated genome organisation and virulence of the virus. The values of these complexity measurement parameters are found to be increased linearly with health index values. |
format | Online Article Text |
id | pubmed-7884664 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Cambridge University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-78846642021-02-16 Diversity of SARS-CoV-2 isolates driven by pressure and health index Singh, R. K. Sanayaima Malik, Md. Zubbair Singh, R. K. Brojen Epidemiol Infect Short Paper One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of the root causes of the fast Covid-19 pandemic and is strongly affected by pressure and health index of the hosts inhabited regions. The calculated mutation rate (m(r)) is observed to be maximum at a particular pressure, beyond which m(r) maintains diversity. Hurst exponent and fractal dimension are found to be optimal at a critical pressure (Pm), whereas, for P > Pm and P < Pm, we found rich genome diversity relating to complicated genome organisation and virulence of the virus. The values of these complexity measurement parameters are found to be increased linearly with health index values. Cambridge University Press 2021-02-01 /pmc/articles/PMC7884664/ /pubmed/33517929 http://dx.doi.org/10.1017/S0950268821000248 Text en © The Author(s) 2021 http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Paper Singh, R. K. Sanayaima Malik, Md. Zubbair Singh, R. K. Brojen Diversity of SARS-CoV-2 isolates driven by pressure and health index |
title | Diversity of SARS-CoV-2 isolates driven by pressure and health index |
title_full | Diversity of SARS-CoV-2 isolates driven by pressure and health index |
title_fullStr | Diversity of SARS-CoV-2 isolates driven by pressure and health index |
title_full_unstemmed | Diversity of SARS-CoV-2 isolates driven by pressure and health index |
title_short | Diversity of SARS-CoV-2 isolates driven by pressure and health index |
title_sort | diversity of sars-cov-2 isolates driven by pressure and health index |
topic | Short Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884664/ https://www.ncbi.nlm.nih.gov/pubmed/33517929 http://dx.doi.org/10.1017/S0950268821000248 |
work_keys_str_mv | AT singhrksanayaima diversityofsarscov2isolatesdrivenbypressureandhealthindex AT malikmdzubbair diversityofsarscov2isolatesdrivenbypressureandhealthindex AT singhrkbrojen diversityofsarscov2isolatesdrivenbypressureandhealthindex |