Cargando…

Diversity of SARS-CoV-2 isolates driven by pressure and health index

One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of...

Descripción completa

Detalles Bibliográficos
Autores principales: Singh, R. K. Sanayaima, Malik, Md. Zubbair, Singh, R. K. Brojen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884664/
https://www.ncbi.nlm.nih.gov/pubmed/33517929
http://dx.doi.org/10.1017/S0950268821000248
_version_ 1783651456170065920
author Singh, R. K. Sanayaima
Malik, Md. Zubbair
Singh, R. K. Brojen
author_facet Singh, R. K. Sanayaima
Malik, Md. Zubbair
Singh, R. K. Brojen
author_sort Singh, R. K. Sanayaima
collection PubMed
description One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of the root causes of the fast Covid-19 pandemic and is strongly affected by pressure and health index of the hosts inhabited regions. The calculated mutation rate (m(r)) is observed to be maximum at a particular pressure, beyond which m(r) maintains diversity. Hurst exponent and fractal dimension are found to be optimal at a critical pressure (Pm), whereas, for P > Pm and P < Pm, we found rich genome diversity relating to complicated genome organisation and virulence of the virus. The values of these complexity measurement parameters are found to be increased linearly with health index values.
format Online
Article
Text
id pubmed-7884664
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Cambridge University Press
record_format MEDLINE/PubMed
spelling pubmed-78846642021-02-16 Diversity of SARS-CoV-2 isolates driven by pressure and health index Singh, R. K. Sanayaima Malik, Md. Zubbair Singh, R. K. Brojen Epidemiol Infect Short Paper One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of the root causes of the fast Covid-19 pandemic and is strongly affected by pressure and health index of the hosts inhabited regions. The calculated mutation rate (m(r)) is observed to be maximum at a particular pressure, beyond which m(r) maintains diversity. Hurst exponent and fractal dimension are found to be optimal at a critical pressure (Pm), whereas, for P > Pm and P < Pm, we found rich genome diversity relating to complicated genome organisation and virulence of the virus. The values of these complexity measurement parameters are found to be increased linearly with health index values. Cambridge University Press 2021-02-01 /pmc/articles/PMC7884664/ /pubmed/33517929 http://dx.doi.org/10.1017/S0950268821000248 Text en © The Author(s) 2021 http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Paper
Singh, R. K. Sanayaima
Malik, Md. Zubbair
Singh, R. K. Brojen
Diversity of SARS-CoV-2 isolates driven by pressure and health index
title Diversity of SARS-CoV-2 isolates driven by pressure and health index
title_full Diversity of SARS-CoV-2 isolates driven by pressure and health index
title_fullStr Diversity of SARS-CoV-2 isolates driven by pressure and health index
title_full_unstemmed Diversity of SARS-CoV-2 isolates driven by pressure and health index
title_short Diversity of SARS-CoV-2 isolates driven by pressure and health index
title_sort diversity of sars-cov-2 isolates driven by pressure and health index
topic Short Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884664/
https://www.ncbi.nlm.nih.gov/pubmed/33517929
http://dx.doi.org/10.1017/S0950268821000248
work_keys_str_mv AT singhrksanayaima diversityofsarscov2isolatesdrivenbypressureandhealthindex
AT malikmdzubbair diversityofsarscov2isolatesdrivenbypressureandhealthindex
AT singhrkbrojen diversityofsarscov2isolatesdrivenbypressureandhealthindex