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Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1

Several native and engineered heat‐stable DNA polymerases from a variety of sources are used as powerful tools in different molecular techniques, including polymerase chain reaction, medical diagnostics, DNA sequencing, biological diversity assessments, and in vitro mutagenesis. The DNA polymerase f...

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Autores principales: Saghatelyan, Ani, Panosyan, Hovik, Trchounian, Armen, Birkeland, Nils‐Kåre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884927/
https://www.ncbi.nlm.nih.gov/pubmed/33415847
http://dx.doi.org/10.1002/mbo3.1149
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author Saghatelyan, Ani
Panosyan, Hovik
Trchounian, Armen
Birkeland, Nils‐Kåre
author_facet Saghatelyan, Ani
Panosyan, Hovik
Trchounian, Armen
Birkeland, Nils‐Kåre
author_sort Saghatelyan, Ani
collection PubMed
description Several native and engineered heat‐stable DNA polymerases from a variety of sources are used as powerful tools in different molecular techniques, including polymerase chain reaction, medical diagnostics, DNA sequencing, biological diversity assessments, and in vitro mutagenesis. The DNA polymerase from the extreme thermophile, Thermus scotoductus strain K1, (TsK1) was expressed in Escherichia coli, purified, and characterized. This enzyme belongs to a distinct phylogenetic clade, different from the commonly used DNA polymerase I enzymes, including those from Thermus  aquaticus and Thermus  thermophilus. The enzyme demonstrated an optimal temperature and pH value of 72–74°C and 9.0, respectively, and could efficiently amplify 2.5 kb DNA products. TsK1 DNA polymerase did not require additional K(+) ions but it did need Mg(2+) at 3–5 mM for optimal activity. It was stable for at least 1 h at 80°C, and its half‐life at 88 and 95°C was 30 and 15 min, respectively. Analysis of the mutation frequency in the amplified products demonstrated that the base insertion fidelity for this enzyme was significantly better than that of Taq DNA polymerase. These results suggest that TsK1 DNA polymerase could be useful in various molecular applications, including high‐temperature DNA polymerization.
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spelling pubmed-78849272021-02-19 Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1 Saghatelyan, Ani Panosyan, Hovik Trchounian, Armen Birkeland, Nils‐Kåre Microbiologyopen Original Articles Several native and engineered heat‐stable DNA polymerases from a variety of sources are used as powerful tools in different molecular techniques, including polymerase chain reaction, medical diagnostics, DNA sequencing, biological diversity assessments, and in vitro mutagenesis. The DNA polymerase from the extreme thermophile, Thermus scotoductus strain K1, (TsK1) was expressed in Escherichia coli, purified, and characterized. This enzyme belongs to a distinct phylogenetic clade, different from the commonly used DNA polymerase I enzymes, including those from Thermus  aquaticus and Thermus  thermophilus. The enzyme demonstrated an optimal temperature and pH value of 72–74°C and 9.0, respectively, and could efficiently amplify 2.5 kb DNA products. TsK1 DNA polymerase did not require additional K(+) ions but it did need Mg(2+) at 3–5 mM for optimal activity. It was stable for at least 1 h at 80°C, and its half‐life at 88 and 95°C was 30 and 15 min, respectively. Analysis of the mutation frequency in the amplified products demonstrated that the base insertion fidelity for this enzyme was significantly better than that of Taq DNA polymerase. These results suggest that TsK1 DNA polymerase could be useful in various molecular applications, including high‐temperature DNA polymerization. John Wiley and Sons Inc. 2021-01-07 /pmc/articles/PMC7884927/ /pubmed/33415847 http://dx.doi.org/10.1002/mbo3.1149 Text en © 2021 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Saghatelyan, Ani
Panosyan, Hovik
Trchounian, Armen
Birkeland, Nils‐Kåre
Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1
title Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1
title_full Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1
title_fullStr Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1
title_full_unstemmed Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1
title_short Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1
title_sort characteristics of dna polymerase i from an extreme thermophile, thermus scotoductus strain k1
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7884927/
https://www.ncbi.nlm.nih.gov/pubmed/33415847
http://dx.doi.org/10.1002/mbo3.1149
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