Cargando…

RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a single-stranded RNA virus that causes coronavirus disease 2019, which spread worldwide immediately after the first patient infected with this virus was discovered in Wuhan, China, in December 2019. Currently, polymerase chain reaction...

Descripción completa

Detalles Bibliográficos
Autores principales: Nishibata, Yuka, Koshimoto, Shota, Ogaki, Kenta, Ishikawa, Erika, Wada, Kosuke, Yoshinari, Miku, Tamura, Yuto, Uozumi, Ryo, Masuda, Sakiko, Tomaru, Utano, Ishizu, Akihiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier GmbH. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7885625/
https://www.ncbi.nlm.nih.gov/pubmed/33640711
http://dx.doi.org/10.1016/j.prp.2021.153381
_version_ 1783651643929133056
author Nishibata, Yuka
Koshimoto, Shota
Ogaki, Kenta
Ishikawa, Erika
Wada, Kosuke
Yoshinari, Miku
Tamura, Yuto
Uozumi, Ryo
Masuda, Sakiko
Tomaru, Utano
Ishizu, Akihiro
author_facet Nishibata, Yuka
Koshimoto, Shota
Ogaki, Kenta
Ishikawa, Erika
Wada, Kosuke
Yoshinari, Miku
Tamura, Yuto
Uozumi, Ryo
Masuda, Sakiko
Tomaru, Utano
Ishizu, Akihiro
author_sort Nishibata, Yuka
collection PubMed
description Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a single-stranded RNA virus that causes coronavirus disease 2019, which spread worldwide immediately after the first patient infected with this virus was discovered in Wuhan, China, in December 2019. Currently, polymerase chain reaction (PCR) specimens for the detection of SARS-CoV-2 include saliva, nasopharyngeal swabs, and lower respiratory tract-derived materials such as sputum. Initially, nasopharyngeal swab specimens were applied mainly to the PCR detection of SARS-CoV-2. There was a risk of infection to healthcare workers due to coughing or sneezing by the subjects at the time of sample collection. In contrast, saliva specimens have a low risk of droplet infection and are easy to collect, and their application to PCR testing has been promoted. In this study, we have determined the detection limit of SARS-CoV-2 in saliva samples and examined the effects of storage temperature and storage time of saliva samples on the PCR detection results. As a result, 5 × 10(3) copies of SARS-CoV-2 could be detected in 1 mL phosphate-buffered saline, whereas 5 × 10(4) copies of SARS-CoV-2 were needed in 1 mL saliva to detect the virus by real-time one-step PCR. Interestingly, SARS-CoV-2 (5 × 10(3) copies/mL) could be detected in saliva supplemented with an RNase inhibitor. Concerning the saliva samples supplemented with an RNase inhibitor, the optimal temperature for sample storage was −20 °C, and PCR detection was maintained within 48 h without problems under these conditions. These finding suggest that RNase in the saliva can affect the detection of SARS-CoV-2 by PCR using saliva samples.
format Online
Article
Text
id pubmed-7885625
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier GmbH.
record_format MEDLINE/PubMed
spelling pubmed-78856252021-02-16 RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples Nishibata, Yuka Koshimoto, Shota Ogaki, Kenta Ishikawa, Erika Wada, Kosuke Yoshinari, Miku Tamura, Yuto Uozumi, Ryo Masuda, Sakiko Tomaru, Utano Ishizu, Akihiro Pathol Res Pract Short Communication Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a single-stranded RNA virus that causes coronavirus disease 2019, which spread worldwide immediately after the first patient infected with this virus was discovered in Wuhan, China, in December 2019. Currently, polymerase chain reaction (PCR) specimens for the detection of SARS-CoV-2 include saliva, nasopharyngeal swabs, and lower respiratory tract-derived materials such as sputum. Initially, nasopharyngeal swab specimens were applied mainly to the PCR detection of SARS-CoV-2. There was a risk of infection to healthcare workers due to coughing or sneezing by the subjects at the time of sample collection. In contrast, saliva specimens have a low risk of droplet infection and are easy to collect, and their application to PCR testing has been promoted. In this study, we have determined the detection limit of SARS-CoV-2 in saliva samples and examined the effects of storage temperature and storage time of saliva samples on the PCR detection results. As a result, 5 × 10(3) copies of SARS-CoV-2 could be detected in 1 mL phosphate-buffered saline, whereas 5 × 10(4) copies of SARS-CoV-2 were needed in 1 mL saliva to detect the virus by real-time one-step PCR. Interestingly, SARS-CoV-2 (5 × 10(3) copies/mL) could be detected in saliva supplemented with an RNase inhibitor. Concerning the saliva samples supplemented with an RNase inhibitor, the optimal temperature for sample storage was −20 °C, and PCR detection was maintained within 48 h without problems under these conditions. These finding suggest that RNase in the saliva can affect the detection of SARS-CoV-2 by PCR using saliva samples. Elsevier GmbH. 2021-04 2021-02-16 /pmc/articles/PMC7885625/ /pubmed/33640711 http://dx.doi.org/10.1016/j.prp.2021.153381 Text en © 2021 Elsevier GmbH. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Short Communication
Nishibata, Yuka
Koshimoto, Shota
Ogaki, Kenta
Ishikawa, Erika
Wada, Kosuke
Yoshinari, Miku
Tamura, Yuto
Uozumi, Ryo
Masuda, Sakiko
Tomaru, Utano
Ishizu, Akihiro
RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
title RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
title_full RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
title_fullStr RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
title_full_unstemmed RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
title_short RNase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
title_sort rnase in the saliva can affect the detection of severe acute respiratory syndrome coronavirus 2 by real-time one-step polymerase chain reaction using saliva samples
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7885625/
https://www.ncbi.nlm.nih.gov/pubmed/33640711
http://dx.doi.org/10.1016/j.prp.2021.153381
work_keys_str_mv AT nishibatayuka rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT koshimotoshota rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT ogakikenta rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT ishikawaerika rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT wadakosuke rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT yoshinarimiku rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT tamurayuto rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT uozumiryo rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT masudasakiko rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT tomaruutano rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples
AT ishizuakihiro rnaseinthesalivacanaffectthedetectionofsevereacuterespiratorysyndromecoronavirus2byrealtimeonesteppolymerasechainreactionusingsalivasamples