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Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica
Snow microorganisms play a significant role in climate change and affecting the snow melting rate in the Arctic and Antarctic regions. While research on algae inhabiting green and red snow has been performed extensively, bacteria dwelling in this biotope have been studied to a much lesser extent. In...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7887010/ https://www.ncbi.nlm.nih.gov/pubmed/33377317 http://dx.doi.org/10.1002/mbo3.1152 |
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author | Smirnova, Margarita Miamin, Uladzislau Kohler, Achim Valentovich, Leonid Akhremchuk, Artur Sidarenka, Anastasiya Dolgikh, Andrey Shapaval, Volha |
author_facet | Smirnova, Margarita Miamin, Uladzislau Kohler, Achim Valentovich, Leonid Akhremchuk, Artur Sidarenka, Anastasiya Dolgikh, Andrey Shapaval, Volha |
author_sort | Smirnova, Margarita |
collection | PubMed |
description | Snow microorganisms play a significant role in climate change and affecting the snow melting rate in the Arctic and Antarctic regions. While research on algae inhabiting green and red snow has been performed extensively, bacteria dwelling in this biotope have been studied to a much lesser extent. In this study, we performed 16S rRNA gene amplicon sequencing of two green snow samples collected from the coastal area of the eastern part of Antarctica and conducted genotypic and phenotypic profiling of 45 fast‐growing bacteria isolated from these samples. 16S rRNA gene amplicon sequencing of two green snow samples showed that bacteria inhabiting these samples are mostly represented by families Burkholderiaceae (46.31%), Flavobacteriaceae (22.98%), and Pseudomonadaceae (17.66%). Identification of 45 fast‐growing bacteria isolated from green snow was performed using 16S rRNA gene sequencing. We demonstrated that they belong to the phyla Actinobacteria and Proteobacteria, and are represented by the genera Arthrobacter, Cryobacterium, Leifsonia, Salinibacterium, Paeniglutamicibacter, Rhodococcus, Polaromonas, Pseudomonas, and Psychrobacter. Nearly all bacterial isolates exhibited various growth temperatures from 4°C to 25°C, and some isolates were characterized by a high level of enzymatic activity. Phenotyping using Fourier transform infrared (FTIR) spectroscopy revealed a possible accumulation of intracellular polymer polyhydroxyalkanoates (PHA) or lipids in some isolates. The bacteria showed different lipids/PHA and protein profiles. It was shown that lipid/PHA and protein spectral regions are the most discriminative for differentiating the isolates. |
format | Online Article Text |
id | pubmed-7887010 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78870102021-02-26 Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica Smirnova, Margarita Miamin, Uladzislau Kohler, Achim Valentovich, Leonid Akhremchuk, Artur Sidarenka, Anastasiya Dolgikh, Andrey Shapaval, Volha Microbiologyopen Original Articles Snow microorganisms play a significant role in climate change and affecting the snow melting rate in the Arctic and Antarctic regions. While research on algae inhabiting green and red snow has been performed extensively, bacteria dwelling in this biotope have been studied to a much lesser extent. In this study, we performed 16S rRNA gene amplicon sequencing of two green snow samples collected from the coastal area of the eastern part of Antarctica and conducted genotypic and phenotypic profiling of 45 fast‐growing bacteria isolated from these samples. 16S rRNA gene amplicon sequencing of two green snow samples showed that bacteria inhabiting these samples are mostly represented by families Burkholderiaceae (46.31%), Flavobacteriaceae (22.98%), and Pseudomonadaceae (17.66%). Identification of 45 fast‐growing bacteria isolated from green snow was performed using 16S rRNA gene sequencing. We demonstrated that they belong to the phyla Actinobacteria and Proteobacteria, and are represented by the genera Arthrobacter, Cryobacterium, Leifsonia, Salinibacterium, Paeniglutamicibacter, Rhodococcus, Polaromonas, Pseudomonas, and Psychrobacter. Nearly all bacterial isolates exhibited various growth temperatures from 4°C to 25°C, and some isolates were characterized by a high level of enzymatic activity. Phenotyping using Fourier transform infrared (FTIR) spectroscopy revealed a possible accumulation of intracellular polymer polyhydroxyalkanoates (PHA) or lipids in some isolates. The bacteria showed different lipids/PHA and protein profiles. It was shown that lipid/PHA and protein spectral regions are the most discriminative for differentiating the isolates. John Wiley and Sons Inc. 2020-12-29 /pmc/articles/PMC7887010/ /pubmed/33377317 http://dx.doi.org/10.1002/mbo3.1152 Text en © 2020 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Original Articles Smirnova, Margarita Miamin, Uladzislau Kohler, Achim Valentovich, Leonid Akhremchuk, Artur Sidarenka, Anastasiya Dolgikh, Andrey Shapaval, Volha Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica |
title | Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica |
title_full | Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica |
title_fullStr | Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica |
title_full_unstemmed | Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica |
title_short | Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica |
title_sort | isolation and characterization of fast‐growing green snow bacteria from coastal east antarctica |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7887010/ https://www.ncbi.nlm.nih.gov/pubmed/33377317 http://dx.doi.org/10.1002/mbo3.1152 |
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