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Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training

Artificial intelligence (AI) holds much promise for enabling highly desired imaging diagnostics improvements. One of the most limiting bottlenecks for the development of useful clinical-grade AI models is the lack of training data. One aspect is the large amount of cases needed and another is the ne...

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Autores principales: Stadler, Caroline Bivik, Lindvall, Martin, Lundström, Claes, Bodén, Anna, Lindman, Karin, Rose, Jeronimo, Treanor, Darren, Blomma, Johan, Stacke, Karin, Pinchaud, Nicolas, Hedlund, Martin, Landgren, Filip, Woisetschläger, Mischa, Forsberg, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7887127/
https://www.ncbi.nlm.nih.gov/pubmed/33169211
http://dx.doi.org/10.1007/s10278-020-00384-4
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author Stadler, Caroline Bivik
Lindvall, Martin
Lundström, Claes
Bodén, Anna
Lindman, Karin
Rose, Jeronimo
Treanor, Darren
Blomma, Johan
Stacke, Karin
Pinchaud, Nicolas
Hedlund, Martin
Landgren, Filip
Woisetschläger, Mischa
Forsberg, Daniel
author_facet Stadler, Caroline Bivik
Lindvall, Martin
Lundström, Claes
Bodén, Anna
Lindman, Karin
Rose, Jeronimo
Treanor, Darren
Blomma, Johan
Stacke, Karin
Pinchaud, Nicolas
Hedlund, Martin
Landgren, Filip
Woisetschläger, Mischa
Forsberg, Daniel
author_sort Stadler, Caroline Bivik
collection PubMed
description Artificial intelligence (AI) holds much promise for enabling highly desired imaging diagnostics improvements. One of the most limiting bottlenecks for the development of useful clinical-grade AI models is the lack of training data. One aspect is the large amount of cases needed and another is the necessity of high-quality ground truth annotation. The aim of the project was to establish and describe the construction of a database with substantial amounts of detail-annotated oncology imaging data from pathology and radiology. A specific objective was to be proactive, that is, to support undefined subsequent AI training across a wide range of tasks, such as detection, quantification, segmentation, and classification, which puts particular focus on the quality and generality of the annotations. The main outcome of this project was the database as such, with a collection of labeled image data from breast, ovary, skin, colon, skeleton, and liver. In addition, this effort also served as an exploration of best practices for further scalability of high-quality image collections, and a main contribution of the study was generic lessons learned regarding how to successfully organize efforts to construct medical imaging databases for AI training, summarized as eight guiding principles covering team, process, and execution aspects.
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spelling pubmed-78871272021-03-03 Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training Stadler, Caroline Bivik Lindvall, Martin Lundström, Claes Bodén, Anna Lindman, Karin Rose, Jeronimo Treanor, Darren Blomma, Johan Stacke, Karin Pinchaud, Nicolas Hedlund, Martin Landgren, Filip Woisetschläger, Mischa Forsberg, Daniel J Digit Imaging Article Artificial intelligence (AI) holds much promise for enabling highly desired imaging diagnostics improvements. One of the most limiting bottlenecks for the development of useful clinical-grade AI models is the lack of training data. One aspect is the large amount of cases needed and another is the necessity of high-quality ground truth annotation. The aim of the project was to establish and describe the construction of a database with substantial amounts of detail-annotated oncology imaging data from pathology and radiology. A specific objective was to be proactive, that is, to support undefined subsequent AI training across a wide range of tasks, such as detection, quantification, segmentation, and classification, which puts particular focus on the quality and generality of the annotations. The main outcome of this project was the database as such, with a collection of labeled image data from breast, ovary, skin, colon, skeleton, and liver. In addition, this effort also served as an exploration of best practices for further scalability of high-quality image collections, and a main contribution of the study was generic lessons learned regarding how to successfully organize efforts to construct medical imaging databases for AI training, summarized as eight guiding principles covering team, process, and execution aspects. Springer International Publishing 2020-11-09 2021-02 /pmc/articles/PMC7887127/ /pubmed/33169211 http://dx.doi.org/10.1007/s10278-020-00384-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Stadler, Caroline Bivik
Lindvall, Martin
Lundström, Claes
Bodén, Anna
Lindman, Karin
Rose, Jeronimo
Treanor, Darren
Blomma, Johan
Stacke, Karin
Pinchaud, Nicolas
Hedlund, Martin
Landgren, Filip
Woisetschläger, Mischa
Forsberg, Daniel
Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
title Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
title_full Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
title_fullStr Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
title_full_unstemmed Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
title_short Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
title_sort proactive construction of an annotated imaging database for artificial intelligence training
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7887127/
https://www.ncbi.nlm.nih.gov/pubmed/33169211
http://dx.doi.org/10.1007/s10278-020-00384-4
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