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Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889079/ https://www.ncbi.nlm.nih.gov/pubmed/33628896 http://dx.doi.org/10.1080/23802359.2021.1872439 |
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author | Li, Yue-Ling Reed, James Xu, Yu-Qian Qu, Da-Hao Sun, Zhong-Shuai |
author_facet | Li, Yue-Ling Reed, James Xu, Yu-Qian Qu, Da-Hao Sun, Zhong-Shuai |
author_sort | Li, Yue-Ling |
collection | PubMed |
description | Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy (SSC) region of 19,166 bp separated by a pair of inverted repeats (IRs) of 26,376 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum-likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis confirmed the sister group relationship between P. fasciculata and the remaining subg. Prunus. |
format | Online Article Text |
id | pubmed-7889079 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78890792021-02-23 Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America Li, Yue-Ling Reed, James Xu, Yu-Qian Qu, Da-Hao Sun, Zhong-Shuai Mitochondrial DNA B Resour Mitogenome Announcement Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy (SSC) region of 19,166 bp separated by a pair of inverted repeats (IRs) of 26,376 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum-likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis confirmed the sister group relationship between P. fasciculata and the remaining subg. Prunus. Taylor & Francis 2021-02-09 /pmc/articles/PMC7889079/ /pubmed/33628896 http://dx.doi.org/10.1080/23802359.2021.1872439 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Yue-Ling Reed, James Xu, Yu-Qian Qu, Da-Hao Sun, Zhong-Shuai Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
title | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
title_full | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
title_fullStr | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
title_full_unstemmed | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
title_short | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
title_sort | complete chloroplast genome of prunus fasciculata (rosaceae), a species native to western north america |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889079/ https://www.ncbi.nlm.nih.gov/pubmed/33628896 http://dx.doi.org/10.1080/23802359.2021.1872439 |
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