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Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America

Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy...

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Autores principales: Li, Yue-Ling, Reed, James, Xu, Yu-Qian, Qu, Da-Hao, Sun, Zhong-Shuai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889079/
https://www.ncbi.nlm.nih.gov/pubmed/33628896
http://dx.doi.org/10.1080/23802359.2021.1872439
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author Li, Yue-Ling
Reed, James
Xu, Yu-Qian
Qu, Da-Hao
Sun, Zhong-Shuai
author_facet Li, Yue-Ling
Reed, James
Xu, Yu-Qian
Qu, Da-Hao
Sun, Zhong-Shuai
author_sort Li, Yue-Ling
collection PubMed
description Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy (SSC) region of 19,166 bp separated by a pair of inverted repeats (IRs) of 26,376 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum-likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis confirmed the sister group relationship between P. fasciculata and the remaining subg. Prunus.
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spelling pubmed-78890792021-02-23 Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America Li, Yue-Ling Reed, James Xu, Yu-Qian Qu, Da-Hao Sun, Zhong-Shuai Mitochondrial DNA B Resour Mitogenome Announcement Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy (SSC) region of 19,166 bp separated by a pair of inverted repeats (IRs) of 26,376 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum-likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis confirmed the sister group relationship between P. fasciculata and the remaining subg. Prunus. Taylor & Francis 2021-02-09 /pmc/articles/PMC7889079/ /pubmed/33628896 http://dx.doi.org/10.1080/23802359.2021.1872439 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Yue-Ling
Reed, James
Xu, Yu-Qian
Qu, Da-Hao
Sun, Zhong-Shuai
Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
title Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
title_full Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
title_fullStr Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
title_full_unstemmed Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
title_short Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
title_sort complete chloroplast genome of prunus fasciculata (rosaceae), a species native to western north america
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889079/
https://www.ncbi.nlm.nih.gov/pubmed/33628896
http://dx.doi.org/10.1080/23802359.2021.1872439
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