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The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing
Labeo catla is a widely cultured species in monoculture and polyculture systems of the Indian subcontinent. In this study, the complete mitochondrial genome sequence of catla was reconstructed from Oxford Nanopore sequence data. The mitochondrial genome is 16,600 bp in length (accession no. is MN830...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889109/ https://www.ncbi.nlm.nih.gov/pubmed/33628875 http://dx.doi.org/10.1080/23802359.2020.1870879 |
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author | Sahoo, Bismay Das, Gargee Sahoo, Lakshman Mahapatra, Kanta Das Meher, Prem K. Udit, Uday Kumar Sundaray, Jitendra Kumar Das, Paramananda |
author_facet | Sahoo, Bismay Das, Gargee Sahoo, Lakshman Mahapatra, Kanta Das Meher, Prem K. Udit, Uday Kumar Sundaray, Jitendra Kumar Das, Paramananda |
author_sort | Sahoo, Bismay |
collection | PubMed |
description | Labeo catla is a widely cultured species in monoculture and polyculture systems of the Indian subcontinent. In this study, the complete mitochondrial genome sequence of catla was reconstructed from Oxford Nanopore sequence data. The mitochondrial genome is 16,600 bp in length (accession no. is MN830943) which is larger than the previously reported catla mitogenomes. Like other vertebrate mitochondrial genomes, it has 13 protein-coding genes, 22 tRNAs, 2 rRNAs and a putative control region. Most of the mitogenes are encoded on H-strand. Phylogenetic analysis showed that Labeo catla is more closely related to Labeo rohita than other labeo species. The catla mtgenome reported here will facilitate population genetics, phylogenetics and molecular taxonomy of Indian major carps. |
format | Online Article Text |
id | pubmed-7889109 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78891092021-02-23 The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing Sahoo, Bismay Das, Gargee Sahoo, Lakshman Mahapatra, Kanta Das Meher, Prem K. Udit, Uday Kumar Sundaray, Jitendra Kumar Das, Paramananda Mitochondrial DNA B Resour Mitogenome Announcement Labeo catla is a widely cultured species in monoculture and polyculture systems of the Indian subcontinent. In this study, the complete mitochondrial genome sequence of catla was reconstructed from Oxford Nanopore sequence data. The mitochondrial genome is 16,600 bp in length (accession no. is MN830943) which is larger than the previously reported catla mitogenomes. Like other vertebrate mitochondrial genomes, it has 13 protein-coding genes, 22 tRNAs, 2 rRNAs and a putative control region. Most of the mitogenes are encoded on H-strand. Phylogenetic analysis showed that Labeo catla is more closely related to Labeo rohita than other labeo species. The catla mtgenome reported here will facilitate population genetics, phylogenetics and molecular taxonomy of Indian major carps. Taylor & Francis 2021-02-09 /pmc/articles/PMC7889109/ /pubmed/33628875 http://dx.doi.org/10.1080/23802359.2020.1870879 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Sahoo, Bismay Das, Gargee Sahoo, Lakshman Mahapatra, Kanta Das Meher, Prem K. Udit, Uday Kumar Sundaray, Jitendra Kumar Das, Paramananda The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing |
title | The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing |
title_full | The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing |
title_fullStr | The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing |
title_full_unstemmed | The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing |
title_short | The complete mitochondrial genome of Labeo catla (Hamilton, 1822) using long read sequencing |
title_sort | complete mitochondrial genome of labeo catla (hamilton, 1822) using long read sequencing |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889109/ https://www.ncbi.nlm.nih.gov/pubmed/33628875 http://dx.doi.org/10.1080/23802359.2020.1870879 |
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