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The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma
Passiflora caerulea is native to brazil. In recent years, the edible, medicinal, and ornamental value of P. caerulea has stimulated its wide cultivation in Southeast Asian countries, especially China. Because the chloroplast genome is rich with information about the species evolution as well as its...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889125/ https://www.ncbi.nlm.nih.gov/pubmed/33628899 http://dx.doi.org/10.1080/23802359.2021.1872442 |
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author | Niu, Ying-Feng Ni, Shu-Bang Liu, Shi-Hong Liu, Jin |
author_facet | Niu, Ying-Feng Ni, Shu-Bang Liu, Shi-Hong Liu, Jin |
author_sort | Niu, Ying-Feng |
collection | PubMed |
description | Passiflora caerulea is native to brazil. In recent years, the edible, medicinal, and ornamental value of P. caerulea has stimulated its wide cultivation in Southeast Asian countries, especially China. Because the chloroplast genome is rich with information about the species evolution as well as its genetic relationship to other species, the P. caerulea chloroplast genome was sequenced, assembled, and annotated in this study. The P. caerulea chloroplast genome is 151,362 bp in total with an overall GC content of 37.03%. It has a quadripartite structure, includes a large single-copy region (LSC, 85,623 bp), a small single-copy region (SSC, 13,397 bp), and two inverted repeat regions (IRa and IRb, 26,180 bp combined). There are 131 genes in the P. caerulea chloroplast genome, including 79 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 7 pseudogenes. Phylogenetic analysis of 29 Passiflora spp. showed that P. caerulea is most closely related to P. edulis. These results provide a considerable foundation for P. caerulea conservation genetics research. |
format | Online Article Text |
id | pubmed-7889125 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78891252021-02-23 The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma Niu, Ying-Feng Ni, Shu-Bang Liu, Shi-Hong Liu, Jin Mitochondrial DNA B Resour Mitogenome Announcement Passiflora caerulea is native to brazil. In recent years, the edible, medicinal, and ornamental value of P. caerulea has stimulated its wide cultivation in Southeast Asian countries, especially China. Because the chloroplast genome is rich with information about the species evolution as well as its genetic relationship to other species, the P. caerulea chloroplast genome was sequenced, assembled, and annotated in this study. The P. caerulea chloroplast genome is 151,362 bp in total with an overall GC content of 37.03%. It has a quadripartite structure, includes a large single-copy region (LSC, 85,623 bp), a small single-copy region (SSC, 13,397 bp), and two inverted repeat regions (IRa and IRb, 26,180 bp combined). There are 131 genes in the P. caerulea chloroplast genome, including 79 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 7 pseudogenes. Phylogenetic analysis of 29 Passiflora spp. showed that P. caerulea is most closely related to P. edulis. These results provide a considerable foundation for P. caerulea conservation genetics research. Taylor & Francis 2021-02-11 /pmc/articles/PMC7889125/ /pubmed/33628899 http://dx.doi.org/10.1080/23802359.2021.1872442 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Niu, Ying-Feng Ni, Shu-Bang Liu, Shi-Hong Liu, Jin The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma |
title | The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma |
title_full | The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma |
title_fullStr | The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma |
title_full_unstemmed | The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma |
title_short | The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma |
title_sort | complete chloroplast genome of passiflora caerulea, a tropical fruit with a distinctive aroma |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889125/ https://www.ncbi.nlm.nih.gov/pubmed/33628899 http://dx.doi.org/10.1080/23802359.2021.1872442 |
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