Cargando…
Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia
Adonis amurensis Regel et Radde is an important cardiac folk medicinal plant which endemic to Northeast Asia. We determined the first complete chloroplast genome of A. amurensis using genome skimming approach. The cp genome was 157,032 bp long, with a large single-copy region (LSC) of 86,218 bp and...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889182/ https://www.ncbi.nlm.nih.gov/pubmed/33628938 http://dx.doi.org/10.1080/23802359.2021.1875916 |
_version_ | 1783652258587607040 |
---|---|
author | Zhang, Li-Qiu Zhang, Xiao-Yan Hu, Yan-Wu Sun, Ren-Shuang Yu, Jun-Lin |
author_facet | Zhang, Li-Qiu Zhang, Xiao-Yan Hu, Yan-Wu Sun, Ren-Shuang Yu, Jun-Lin |
author_sort | Zhang, Li-Qiu |
collection | PubMed |
description | Adonis amurensis Regel et Radde is an important cardiac folk medicinal plant which endemic to Northeast Asia. We determined the first complete chloroplast genome of A. amurensis using genome skimming approach. The cp genome was 157,032 bp long, with a large single-copy region (LSC) of 86,218 bp and a small single-copy region (SSC) of 18,212 bp separated by a pair of inverted repeats (IRs) of 26,301 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Adonideae and Isopyreae using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that A. amurensis is close related with Adonis sutchuenensis. |
format | Online Article Text |
id | pubmed-7889182 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78891822021-02-23 Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia Zhang, Li-Qiu Zhang, Xiao-Yan Hu, Yan-Wu Sun, Ren-Shuang Yu, Jun-Lin Mitochondrial DNA B Resour Mitogenome Announcement Adonis amurensis Regel et Radde is an important cardiac folk medicinal plant which endemic to Northeast Asia. We determined the first complete chloroplast genome of A. amurensis using genome skimming approach. The cp genome was 157,032 bp long, with a large single-copy region (LSC) of 86,218 bp and a small single-copy region (SSC) of 18,212 bp separated by a pair of inverted repeats (IRs) of 26,301 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Adonideae and Isopyreae using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that A. amurensis is close related with Adonis sutchuenensis. Taylor & Francis 2021-02-12 /pmc/articles/PMC7889182/ /pubmed/33628938 http://dx.doi.org/10.1080/23802359.2021.1875916 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Li-Qiu Zhang, Xiao-Yan Hu, Yan-Wu Sun, Ren-Shuang Yu, Jun-Lin Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
title | Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
title_full | Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
title_fullStr | Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
title_full_unstemmed | Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
title_short | Complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
title_sort | complete chloroplast genome of adonis amurensis (ranunculaceae), an important cardiac folk medicinal plant in east asia |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889182/ https://www.ncbi.nlm.nih.gov/pubmed/33628938 http://dx.doi.org/10.1080/23802359.2021.1875916 |
work_keys_str_mv | AT zhangliqiu completechloroplastgenomeofadonisamurensisranunculaceaeanimportantcardiacfolkmedicinalplantineastasia AT zhangxiaoyan completechloroplastgenomeofadonisamurensisranunculaceaeanimportantcardiacfolkmedicinalplantineastasia AT huyanwu completechloroplastgenomeofadonisamurensisranunculaceaeanimportantcardiacfolkmedicinalplantineastasia AT sunrenshuang completechloroplastgenomeofadonisamurensisranunculaceaeanimportantcardiacfolkmedicinalplantineastasia AT yujunlin completechloroplastgenomeofadonisamurensisranunculaceaeanimportantcardiacfolkmedicinalplantineastasia |