The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern

Lemmaphyllum intermedium is a valuable medicinal fern in China. We have determined its complete chloroplast genome using Illumina paired-end sequencing. The genome is 157,795 bp in length with 132 genes, including 88 protein-coding genes, eight ribosomal RNA genes, 35 tRNA genes, and one pseudogene....

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Zhen, Li, Ning, Li, Zhan, Liu, Yujia, Yang, Ping, Hong, Yongfeng, He, Ziqing, Su, Yingjuan, Wang, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889191/
https://www.ncbi.nlm.nih.gov/pubmed/33628877
http://dx.doi.org/10.1080/23802359.2020.1870888
_version_ 1783652259757817856
author Wang, Zhen
Li, Ning
Li, Zhan
Liu, Yujia
Yang, Ping
Hong, Yongfeng
He, Ziqing
Su, Yingjuan
Wang, Ting
author_facet Wang, Zhen
Li, Ning
Li, Zhan
Liu, Yujia
Yang, Ping
Hong, Yongfeng
He, Ziqing
Su, Yingjuan
Wang, Ting
author_sort Wang, Zhen
collection PubMed
description Lemmaphyllum intermedium is a valuable medicinal fern in China. We have determined its complete chloroplast genome using Illumina paired-end sequencing. The genome is 157,795 bp in length with 132 genes, including 88 protein-coding genes, eight ribosomal RNA genes, 35 tRNA genes, and one pseudogene. It has a quadripartite structure consisting of a small single-copy (SSC) of 21,764 bp, a large single-copy (LSC) of 81,189 bp, and two inverted repeats (IRs) of 27,421 bp each. A maximum-likelihood phylogenetic tree reconstructed by using complete chloroplast genome sequences reveals that L. intermedium is closely related to Lemmaphyllum carnosum var. microphyllum with strong support.
format Online
Article
Text
id pubmed-7889191
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78891912021-02-23 The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern Wang, Zhen Li, Ning Li, Zhan Liu, Yujia Yang, Ping Hong, Yongfeng He, Ziqing Su, Yingjuan Wang, Ting Mitochondrial DNA B Resour Mitogenome Announcement Lemmaphyllum intermedium is a valuable medicinal fern in China. We have determined its complete chloroplast genome using Illumina paired-end sequencing. The genome is 157,795 bp in length with 132 genes, including 88 protein-coding genes, eight ribosomal RNA genes, 35 tRNA genes, and one pseudogene. It has a quadripartite structure consisting of a small single-copy (SSC) of 21,764 bp, a large single-copy (LSC) of 81,189 bp, and two inverted repeats (IRs) of 27,421 bp each. A maximum-likelihood phylogenetic tree reconstructed by using complete chloroplast genome sequences reveals that L. intermedium is closely related to Lemmaphyllum carnosum var. microphyllum with strong support. Taylor & Francis 2021-02-09 /pmc/articles/PMC7889191/ /pubmed/33628877 http://dx.doi.org/10.1080/23802359.2020.1870888 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Zhen
Li, Ning
Li, Zhan
Liu, Yujia
Yang, Ping
Hong, Yongfeng
He, Ziqing
Su, Yingjuan
Wang, Ting
The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern
title The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern
title_full The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern
title_fullStr The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern
title_full_unstemmed The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern
title_short The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern
title_sort complete chloroplast genome of lemmaphyllum intermedium, a valuable medicinal fern
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889191/
https://www.ncbi.nlm.nih.gov/pubmed/33628877
http://dx.doi.org/10.1080/23802359.2020.1870888
work_keys_str_mv AT wangzhen thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT lining thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT lizhan thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT liuyujia thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT yangping thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT hongyongfeng thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT heziqing thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT suyingjuan thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT wangting thecompletechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT wangzhen completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT lining completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT lizhan completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT liuyujia completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT yangping completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT hongyongfeng completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT heziqing completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT suyingjuan completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern
AT wangting completechloroplastgenomeoflemmaphyllumintermediumavaluablemedicinalfern

Ejemplares similares