Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species

Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one...

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Autores principales: Jahari, Puteri Nur Syahzanani, Mohd Azman, Shahfiz, Munian, Kaviarasu, Ahmad Ruzman, Nor Hazwani, Shamsir, Mohd Shahir, Richter, Stine R., Mohd Salleh, Faezah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889269/
https://www.ncbi.nlm.nih.gov/pubmed/33628904
http://dx.doi.org/10.1080/23802359.2021.1872433
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author Jahari, Puteri Nur Syahzanani
Mohd Azman, Shahfiz
Munian, Kaviarasu
Ahmad Ruzman, Nor Hazwani
Shamsir, Mohd Shahir
Richter, Stine R.
Mohd Salleh, Faezah
author_facet Jahari, Puteri Nur Syahzanani
Mohd Azman, Shahfiz
Munian, Kaviarasu
Ahmad Ruzman, Nor Hazwani
Shamsir, Mohd Shahir
Richter, Stine R.
Mohd Salleh, Faezah
author_sort Jahari, Puteri Nur Syahzanani
collection PubMed
description Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one control region. The circular molecule of L. sabanus has a typical vertebrate gene arrangement. Phylogenetic and BLASTn analysis using 10 Leopoldamys species mitogenomes revealed sequence variation occurred within species from different time zones. Along with the taxonomic issues, this suggests a landscape change might influence genetic connectivity.
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spelling pubmed-78892692021-02-23 Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species Jahari, Puteri Nur Syahzanani Mohd Azman, Shahfiz Munian, Kaviarasu Ahmad Ruzman, Nor Hazwani Shamsir, Mohd Shahir Richter, Stine R. Mohd Salleh, Faezah Mitochondrial DNA B Resour Mitogenome Announcement Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one control region. The circular molecule of L. sabanus has a typical vertebrate gene arrangement. Phylogenetic and BLASTn analysis using 10 Leopoldamys species mitogenomes revealed sequence variation occurred within species from different time zones. Along with the taxonomic issues, this suggests a landscape change might influence genetic connectivity. Taylor & Francis 2021-02-11 /pmc/articles/PMC7889269/ /pubmed/33628904 http://dx.doi.org/10.1080/23802359.2021.1872433 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jahari, Puteri Nur Syahzanani
Mohd Azman, Shahfiz
Munian, Kaviarasu
Ahmad Ruzman, Nor Hazwani
Shamsir, Mohd Shahir
Richter, Stine R.
Mohd Salleh, Faezah
Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
title Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
title_full Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
title_fullStr Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
title_full_unstemmed Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
title_short Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
title_sort characterization of the mitogenomes of long-tailed giant rat, leopoldamys sabanus and a comparative analysis with other leopoldamys species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889269/
https://www.ncbi.nlm.nih.gov/pubmed/33628904
http://dx.doi.org/10.1080/23802359.2021.1872433
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