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Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889269/ https://www.ncbi.nlm.nih.gov/pubmed/33628904 http://dx.doi.org/10.1080/23802359.2021.1872433 |
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author | Jahari, Puteri Nur Syahzanani Mohd Azman, Shahfiz Munian, Kaviarasu Ahmad Ruzman, Nor Hazwani Shamsir, Mohd Shahir Richter, Stine R. Mohd Salleh, Faezah |
author_facet | Jahari, Puteri Nur Syahzanani Mohd Azman, Shahfiz Munian, Kaviarasu Ahmad Ruzman, Nor Hazwani Shamsir, Mohd Shahir Richter, Stine R. Mohd Salleh, Faezah |
author_sort | Jahari, Puteri Nur Syahzanani |
collection | PubMed |
description | Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one control region. The circular molecule of L. sabanus has a typical vertebrate gene arrangement. Phylogenetic and BLASTn analysis using 10 Leopoldamys species mitogenomes revealed sequence variation occurred within species from different time zones. Along with the taxonomic issues, this suggests a landscape change might influence genetic connectivity. |
format | Online Article Text |
id | pubmed-7889269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78892692021-02-23 Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species Jahari, Puteri Nur Syahzanani Mohd Azman, Shahfiz Munian, Kaviarasu Ahmad Ruzman, Nor Hazwani Shamsir, Mohd Shahir Richter, Stine R. Mohd Salleh, Faezah Mitochondrial DNA B Resour Mitogenome Announcement Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one control region. The circular molecule of L. sabanus has a typical vertebrate gene arrangement. Phylogenetic and BLASTn analysis using 10 Leopoldamys species mitogenomes revealed sequence variation occurred within species from different time zones. Along with the taxonomic issues, this suggests a landscape change might influence genetic connectivity. Taylor & Francis 2021-02-11 /pmc/articles/PMC7889269/ /pubmed/33628904 http://dx.doi.org/10.1080/23802359.2021.1872433 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Jahari, Puteri Nur Syahzanani Mohd Azman, Shahfiz Munian, Kaviarasu Ahmad Ruzman, Nor Hazwani Shamsir, Mohd Shahir Richter, Stine R. Mohd Salleh, Faezah Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
title | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
title_full | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
title_fullStr | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
title_full_unstemmed | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
title_short | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
title_sort | characterization of the mitogenomes of long-tailed giant rat, leopoldamys sabanus and a comparative analysis with other leopoldamys species |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889269/ https://www.ncbi.nlm.nih.gov/pubmed/33628904 http://dx.doi.org/10.1080/23802359.2021.1872433 |
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