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Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium

A long-standing problem at the frontier of biomechanical studies is to develop fast methods capable of estimating material properties from clinical data. In this paper, we have studied three surrogate models based on machine learning (ML) methods for fast parameter estimation of left ventricular (LV...

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Detalles Bibliográficos
Autores principales: Cai, Li, Ren, Lei, Wang, Yongheng, Xie, Wenxian, Zhu, Guangyu, Gao, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7890479/
https://www.ncbi.nlm.nih.gov/pubmed/33614068
http://dx.doi.org/10.1098/rsos.201121
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author Cai, Li
Ren, Lei
Wang, Yongheng
Xie, Wenxian
Zhu, Guangyu
Gao, Hao
author_facet Cai, Li
Ren, Lei
Wang, Yongheng
Xie, Wenxian
Zhu, Guangyu
Gao, Hao
author_sort Cai, Li
collection PubMed
description A long-standing problem at the frontier of biomechanical studies is to develop fast methods capable of estimating material properties from clinical data. In this paper, we have studied three surrogate models based on machine learning (ML) methods for fast parameter estimation of left ventricular (LV) myocardium. We use three ML methods named K-nearest neighbour (KNN), XGBoost and multi-layer perceptron (MLP) to emulate the relationships between pressure and volume strains during the diastolic filling. Firstly, to train the surrogate models, a forward finite-element simulator of LV diastolic filling is used. Then the training data are projected in a low-dimensional parametrized space. Next, three ML models are trained to learn the relationships of pressure–volume and pressure–strain. Finally, an inverse parameter estimation problem is formulated by using those trained surrogate models. Our results show that the three ML models can learn the relationships of pressure–volume and pressure–strain very well, and the parameter inference using the surrogate models can be carried out in minutes. Estimated parameters from both the XGBoost and MLP models have much less uncertainties compared with the KNN model. Our results further suggest that the XGBoost model is better for predicting the LV diastolic dynamics and estimating passive parameters than other two surrogate models. Further studies are warranted to investigate how XGBoost can be used for emulating cardiac pump function in a multi-physics and multi-scale framework.
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spelling pubmed-78904792021-02-18 Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium Cai, Li Ren, Lei Wang, Yongheng Xie, Wenxian Zhu, Guangyu Gao, Hao R Soc Open Sci Mathematics A long-standing problem at the frontier of biomechanical studies is to develop fast methods capable of estimating material properties from clinical data. In this paper, we have studied three surrogate models based on machine learning (ML) methods for fast parameter estimation of left ventricular (LV) myocardium. We use three ML methods named K-nearest neighbour (KNN), XGBoost and multi-layer perceptron (MLP) to emulate the relationships between pressure and volume strains during the diastolic filling. Firstly, to train the surrogate models, a forward finite-element simulator of LV diastolic filling is used. Then the training data are projected in a low-dimensional parametrized space. Next, three ML models are trained to learn the relationships of pressure–volume and pressure–strain. Finally, an inverse parameter estimation problem is formulated by using those trained surrogate models. Our results show that the three ML models can learn the relationships of pressure–volume and pressure–strain very well, and the parameter inference using the surrogate models can be carried out in minutes. Estimated parameters from both the XGBoost and MLP models have much less uncertainties compared with the KNN model. Our results further suggest that the XGBoost model is better for predicting the LV diastolic dynamics and estimating passive parameters than other two surrogate models. Further studies are warranted to investigate how XGBoost can be used for emulating cardiac pump function in a multi-physics and multi-scale framework. The Royal Society 2021-01-13 /pmc/articles/PMC7890479/ /pubmed/33614068 http://dx.doi.org/10.1098/rsos.201121 Text en © 2021 The Authors. http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Mathematics
Cai, Li
Ren, Lei
Wang, Yongheng
Xie, Wenxian
Zhu, Guangyu
Gao, Hao
Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
title Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
title_full Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
title_fullStr Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
title_full_unstemmed Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
title_short Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
title_sort surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
topic Mathematics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7890479/
https://www.ncbi.nlm.nih.gov/pubmed/33614068
http://dx.doi.org/10.1098/rsos.201121
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