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A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients
BACKGROUND: Gastric cancer (GC) has a high mortality rate and is one of the most fatal malignant tumours. Male sex has been proven as an independent risk factor for GC. This study aimed to identify immune-related genes (IRGs) associated with the prognosis of male GC. METHODS: RNA sequencing and clin...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7891008/ https://www.ncbi.nlm.nih.gov/pubmed/33602220 http://dx.doi.org/10.1186/s12935-021-01823-0 |
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author | Xu, Xin Lu, Yida Wu, Youliang Wang, Mingliang Wang, Xiaodong Wang, Huizhen Chen, Bo Li, Yongxiang |
author_facet | Xu, Xin Lu, Yida Wu, Youliang Wang, Mingliang Wang, Xiaodong Wang, Huizhen Chen, Bo Li, Yongxiang |
author_sort | Xu, Xin |
collection | PubMed |
description | BACKGROUND: Gastric cancer (GC) has a high mortality rate and is one of the most fatal malignant tumours. Male sex has been proven as an independent risk factor for GC. This study aimed to identify immune-related genes (IRGs) associated with the prognosis of male GC. METHODS: RNA sequencing and clinical data were obtained from The Cancer Genome Atlas (TCGA) database. Differentially expressed IRGs between male GC and normal tissues were identified by integrated bioinformatics analysis. Univariate and multivariate Cox regression analyses were applied to screen survival-associated IRGs. Then, GC patients were separated into high- and low-risk groups based on the median risk score. Furthermore, a nomogram was constructed based on the TCGA dataset. The prognostic value of the risk signature model was evaluated by Kaplan-Meier curve, receiver operating characteristic (ROC), Harrell’s concordance index and calibration curves. In addition, the gene expression dataset from the Gene Expression Omnibus (GEO) was also downloaded for external validation. The relative proportions of 22 types of infiltrating immune cells in each male GC sample were evaluated using CIBERSORT. RESULTS: A total of 276 differentially expressed IRGs were screened, including 189 up-regulated and 87 down-regulated genes. Subsequently, a seven-IRGs signature (LCN12, CCL21, RNASE2, CGB5, NRG4, AGTR1 and NPR3) was identified to be significantly associated with the overall survival (OS) of male GC patients. Survival analysis indicated that patients in the high-risk group exhibited a poor clinical outcome. The results of multivariate analysis revealed that the risk score was an independent prognostic factor. The established nomogram could be used to evaluate the prognosis of individual male GC patients. Further analysis showed that the prognostic model had excellent predictive performance in both TCGA and validated cohorts. Besides, the results of tumour-infiltrating immune cell analysis indicated that the seven-IRGs signature could reflect the status of the tumour immune microenvironment. CONCLUSIONS: Our study developed a novel seven-IRGs risk signature for individualized survival prediction of male GC patients. |
format | Online Article Text |
id | pubmed-7891008 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-78910082021-02-22 A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients Xu, Xin Lu, Yida Wu, Youliang Wang, Mingliang Wang, Xiaodong Wang, Huizhen Chen, Bo Li, Yongxiang Cancer Cell Int Primary Research BACKGROUND: Gastric cancer (GC) has a high mortality rate and is one of the most fatal malignant tumours. Male sex has been proven as an independent risk factor for GC. This study aimed to identify immune-related genes (IRGs) associated with the prognosis of male GC. METHODS: RNA sequencing and clinical data were obtained from The Cancer Genome Atlas (TCGA) database. Differentially expressed IRGs between male GC and normal tissues were identified by integrated bioinformatics analysis. Univariate and multivariate Cox regression analyses were applied to screen survival-associated IRGs. Then, GC patients were separated into high- and low-risk groups based on the median risk score. Furthermore, a nomogram was constructed based on the TCGA dataset. The prognostic value of the risk signature model was evaluated by Kaplan-Meier curve, receiver operating characteristic (ROC), Harrell’s concordance index and calibration curves. In addition, the gene expression dataset from the Gene Expression Omnibus (GEO) was also downloaded for external validation. The relative proportions of 22 types of infiltrating immune cells in each male GC sample were evaluated using CIBERSORT. RESULTS: A total of 276 differentially expressed IRGs were screened, including 189 up-regulated and 87 down-regulated genes. Subsequently, a seven-IRGs signature (LCN12, CCL21, RNASE2, CGB5, NRG4, AGTR1 and NPR3) was identified to be significantly associated with the overall survival (OS) of male GC patients. Survival analysis indicated that patients in the high-risk group exhibited a poor clinical outcome. The results of multivariate analysis revealed that the risk score was an independent prognostic factor. The established nomogram could be used to evaluate the prognosis of individual male GC patients. Further analysis showed that the prognostic model had excellent predictive performance in both TCGA and validated cohorts. Besides, the results of tumour-infiltrating immune cell analysis indicated that the seven-IRGs signature could reflect the status of the tumour immune microenvironment. CONCLUSIONS: Our study developed a novel seven-IRGs risk signature for individualized survival prediction of male GC patients. BioMed Central 2021-02-18 /pmc/articles/PMC7891008/ /pubmed/33602220 http://dx.doi.org/10.1186/s12935-021-01823-0 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Primary Research Xu, Xin Lu, Yida Wu, Youliang Wang, Mingliang Wang, Xiaodong Wang, Huizhen Chen, Bo Li, Yongxiang A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
title | A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
title_full | A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
title_fullStr | A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
title_full_unstemmed | A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
title_short | A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
title_sort | signature of seven immune‐related genes predicts overall survival in male gastric cancer patients |
topic | Primary Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7891008/ https://www.ncbi.nlm.nih.gov/pubmed/33602220 http://dx.doi.org/10.1186/s12935-021-01823-0 |
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