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Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine
OBJECTIVE: Development of biofluid‐based biomarkers is attractive for the diagnosis of chronic obstructive pulmonary disease (COPD) but still lacking. Thus, here we aimed to identify serum metabolic biomarkers for the diagnosis of COPD. METHODS: In this study, we investigated serum metabolic feature...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7891523/ https://www.ncbi.nlm.nih.gov/pubmed/33141993 http://dx.doi.org/10.1002/jcla.23641 |
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author | Zheng, Hong Hu, Yiran Dong, Li Shu, Qi Zhu, Mingyang Li, Yuping Chen, Chengshui Gao, Hongchang Yang, Li |
author_facet | Zheng, Hong Hu, Yiran Dong, Li Shu, Qi Zhu, Mingyang Li, Yuping Chen, Chengshui Gao, Hongchang Yang, Li |
author_sort | Zheng, Hong |
collection | PubMed |
description | OBJECTIVE: Development of biofluid‐based biomarkers is attractive for the diagnosis of chronic obstructive pulmonary disease (COPD) but still lacking. Thus, here we aimed to identify serum metabolic biomarkers for the diagnosis of COPD. METHODS: In this study, we investigated serum metabolic features between COPD patients (n = 54) and normal individuals (n = 74) using a (1)H NMR‐based metabolomics approach and developed an integrated method of least‐squares support vector machine (LS‐SVM) and serum metabolic biomarkers to assist COPD diagnosis. RESULTS: We observed a hypometabolic state in serum of COPD patients, as indicated by decreases in N‐acetyl‐glycoprotein (NAG), lipoprotein (LOP, mainly LDL/VLDL), polyunsaturated fatty acid (pUFA), glucose, alanine, leucine, histidine, valine, and lactate. Using an integrated method of multivariable and univariate analyses, NAG and LOP were identified as two important metabolites for distinguishing between COPD patients and controls. Subsequently, we developed a LS‐SVM classifier using these two markers and found that LS‐SVM classifiers with linear and polynomial kernels performed better than the classifier with RBF kernel. Linear and polynomial LS‐SVM classifiers can achieve the total accuracy rates of 80.77% and 84.62% and the AUC values of 0.87 and 0.90 for COPD diagnosis, respectively. CONCLUSIONS: This study suggests that artificial intelligence integrated with serum metabolic biomarkers has a great potential for auxiliary diagnosis of COPD. |
format | Online Article Text |
id | pubmed-7891523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78915232021-03-10 Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine Zheng, Hong Hu, Yiran Dong, Li Shu, Qi Zhu, Mingyang Li, Yuping Chen, Chengshui Gao, Hongchang Yang, Li J Clin Lab Anal Research Articles OBJECTIVE: Development of biofluid‐based biomarkers is attractive for the diagnosis of chronic obstructive pulmonary disease (COPD) but still lacking. Thus, here we aimed to identify serum metabolic biomarkers for the diagnosis of COPD. METHODS: In this study, we investigated serum metabolic features between COPD patients (n = 54) and normal individuals (n = 74) using a (1)H NMR‐based metabolomics approach and developed an integrated method of least‐squares support vector machine (LS‐SVM) and serum metabolic biomarkers to assist COPD diagnosis. RESULTS: We observed a hypometabolic state in serum of COPD patients, as indicated by decreases in N‐acetyl‐glycoprotein (NAG), lipoprotein (LOP, mainly LDL/VLDL), polyunsaturated fatty acid (pUFA), glucose, alanine, leucine, histidine, valine, and lactate. Using an integrated method of multivariable and univariate analyses, NAG and LOP were identified as two important metabolites for distinguishing between COPD patients and controls. Subsequently, we developed a LS‐SVM classifier using these two markers and found that LS‐SVM classifiers with linear and polynomial kernels performed better than the classifier with RBF kernel. Linear and polynomial LS‐SVM classifiers can achieve the total accuracy rates of 80.77% and 84.62% and the AUC values of 0.87 and 0.90 for COPD diagnosis, respectively. CONCLUSIONS: This study suggests that artificial intelligence integrated with serum metabolic biomarkers has a great potential for auxiliary diagnosis of COPD. John Wiley and Sons Inc. 2020-11-03 /pmc/articles/PMC7891523/ /pubmed/33141993 http://dx.doi.org/10.1002/jcla.23641 Text en © 2020 The Authors. Journal of Clinical Laboratory Analysis Published by Wiley Periodicals LLC This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Zheng, Hong Hu, Yiran Dong, Li Shu, Qi Zhu, Mingyang Li, Yuping Chen, Chengshui Gao, Hongchang Yang, Li Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
title | Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
title_full | Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
title_fullStr | Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
title_full_unstemmed | Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
title_short | Predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
title_sort | predictive diagnosis of chronic obstructive pulmonary disease using serum metabolic biomarkers and least‐squares support vector machine |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7891523/ https://www.ncbi.nlm.nih.gov/pubmed/33141993 http://dx.doi.org/10.1002/jcla.23641 |
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