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RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C
Sampling of prostate tissue (n = 97) was performed in conjunction with planned radical prostatectomies, in collaboration with Biobank1(®). The tissue used in this study was collected during the period 2003–2016, quickly frozen, and kept at −80°C until assayed in 2018. RNA extraction was performed wi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Mary Ann Liebert, Inc., publishers
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892308/ https://www.ncbi.nlm.nih.gov/pubmed/32865438 http://dx.doi.org/10.1089/bio.2019.0136 |
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author | Dybos, Sandra Amalie Brustad, Åge Winje Rolfseng, Toril Kvam, Solveig Olsen, Oddrun Elise Halgunset, Jostein Skogseth, Haakon |
author_facet | Dybos, Sandra Amalie Brustad, Åge Winje Rolfseng, Toril Kvam, Solveig Olsen, Oddrun Elise Halgunset, Jostein Skogseth, Haakon |
author_sort | Dybos, Sandra Amalie |
collection | PubMed |
description | Sampling of prostate tissue (n = 97) was performed in conjunction with planned radical prostatectomies, in collaboration with Biobank1(®). The tissue used in this study was collected during the period 2003–2016, quickly frozen, and kept at −80°C until assayed in 2018. RNA extraction was performed with two different protocols (miRNeasy and mirVana™), and RNA quality was determined by measuring the RNA Integrity Number (RIN). The level of isoprostanes is widely recognized as a specific indicator of lipid peroxidation both in vitro and in vivo. The level of 8-isoprostane was measured because it is the main oxidation product of arachidonic acid, the most abundant phospholipid fatty acid. The level of 8-isoprostane was measured using enzyme immunoassay. There was no statistically significant difference in yield between the samples isolated with the mirVana protocol compared to the miRNeasy protocol. Average RIN was 2.8 units higher with the mirVana extraction protocol compared to the miRNeasy protocol (p < 0.001). For miRNeasy extractions, RINs were 7.1 for prostatectomies in 2005–2007 and 6.2 for those in 2018 (p < 0.001). For mirVana extractions, the difference in RIN score between the two groups regarding years of collection was not statistically significant. There was no significant increase in the levels of 8-isoprostane between the 2005–2007 samples and the 2018. The conclusion is that there is no oxidation of phospholipids with increasing storage time up to 15 years. |
format | Online Article Text |
id | pubmed-7892308 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Mary Ann Liebert, Inc., publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-78923082021-02-19 RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C Dybos, Sandra Amalie Brustad, Åge Winje Rolfseng, Toril Kvam, Solveig Olsen, Oddrun Elise Halgunset, Jostein Skogseth, Haakon Biopreserv Biobank Original Articles Sampling of prostate tissue (n = 97) was performed in conjunction with planned radical prostatectomies, in collaboration with Biobank1(®). The tissue used in this study was collected during the period 2003–2016, quickly frozen, and kept at −80°C until assayed in 2018. RNA extraction was performed with two different protocols (miRNeasy and mirVana™), and RNA quality was determined by measuring the RNA Integrity Number (RIN). The level of isoprostanes is widely recognized as a specific indicator of lipid peroxidation both in vitro and in vivo. The level of 8-isoprostane was measured because it is the main oxidation product of arachidonic acid, the most abundant phospholipid fatty acid. The level of 8-isoprostane was measured using enzyme immunoassay. There was no statistically significant difference in yield between the samples isolated with the mirVana protocol compared to the miRNeasy protocol. Average RIN was 2.8 units higher with the mirVana extraction protocol compared to the miRNeasy protocol (p < 0.001). For miRNeasy extractions, RINs were 7.1 for prostatectomies in 2005–2007 and 6.2 for those in 2018 (p < 0.001). For mirVana extractions, the difference in RIN score between the two groups regarding years of collection was not statistically significant. There was no significant increase in the levels of 8-isoprostane between the 2005–2007 samples and the 2018. The conclusion is that there is no oxidation of phospholipids with increasing storage time up to 15 years. Mary Ann Liebert, Inc., publishers 2021-02-01 2021-02-09 /pmc/articles/PMC7892308/ /pubmed/32865438 http://dx.doi.org/10.1089/bio.2019.0136 Text en © Sandra Amalie Dybos et al., 2021; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are cited. |
spellingShingle | Original Articles Dybos, Sandra Amalie Brustad, Åge Winje Rolfseng, Toril Kvam, Solveig Olsen, Oddrun Elise Halgunset, Jostein Skogseth, Haakon RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C |
title | RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C |
title_full | RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C |
title_fullStr | RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C |
title_full_unstemmed | RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C |
title_short | RNA-Integrity and 8-Isoprostane Levels Are Stable in Prostate Tissue Samples Upon Long-Term Storage at −80°C |
title_sort | rna-integrity and 8-isoprostane levels are stable in prostate tissue samples upon long-term storage at −80°c |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892308/ https://www.ncbi.nlm.nih.gov/pubmed/32865438 http://dx.doi.org/10.1089/bio.2019.0136 |
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