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Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses
Introduction: Congenital long QT syndrome (LQTS) is a cardiac ion channelopathy that predisposes affected individuals to spontaneous ventricular tachycardia/fibrillation (VT/VF) and sudden cardiac death (SCD). The main aims of the study were to: (1) provide a description of the local epidemiology of...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892622/ https://www.ncbi.nlm.nih.gov/pubmed/33614747 http://dx.doi.org/10.3389/fcvm.2021.608592 |
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author | Tse, Gary Lee, Sharen Zhou, Jiandong Liu, Tong Wong, Ian Chi Kei Mak, Chloe Mok, Ngai Shing Jeevaratnam, Kamalan Zhang, Qingpeng Cheng, Shuk Han Wong, Wing Tak |
author_facet | Tse, Gary Lee, Sharen Zhou, Jiandong Liu, Tong Wong, Ian Chi Kei Mak, Chloe Mok, Ngai Shing Jeevaratnam, Kamalan Zhang, Qingpeng Cheng, Shuk Han Wong, Wing Tak |
author_sort | Tse, Gary |
collection | PubMed |
description | Introduction: Congenital long QT syndrome (LQTS) is a cardiac ion channelopathy that predisposes affected individuals to spontaneous ventricular tachycardia/fibrillation (VT/VF) and sudden cardiac death (SCD). The main aims of the study were to: (1) provide a description of the local epidemiology of LQTS, (2) identify significant risk factors of ventricular arrhythmias in this cohort, and (3) compare the performance of traditional Cox regression with that of random survival forests. Methods: This was a territory-wide retrospective cohort study of patients diagnosed with congenital LQTS between 1997 and 2019. The primary outcome was spontaneous VT/VF. Results: This study included 121 patients [median age of initial presentation: 20 (interquartile range: 8–44) years, 62% female] with a median follow-up of 88 (51–143) months. Genetic analysis identified novel mutations in KCNQ1, KCNH2, SCN5A, ANK2, CACNA1C, CAV3, and AKAP9. During follow-up, 23 patients developed VT/VF. Univariate Cox regression analysis revealed that age [hazard ratio (HR): 1.02 (1.01–1.04), P = 0.007; optimum cut-off: 19 years], presentation with syncope [HR: 3.86 (1.43–10.42), P = 0.008] or VT/VF [HR: 3.68 (1.62–8.37), P = 0.002] and the presence of PVCs [HR: 2.89 (1.22–6.83), P = 0.015] were significant predictors of spontaneous VT/VF. Only initial presentation with syncope remained significant after multivariate adjustment [HR: 3.58 (1.32–9.71), P = 0.011]. Random survival forest (RSF) model provided significant improvement in prediction performance over Cox regression (precision: 0.80 vs. 0.69; recall: 0.79 vs. 0.68; AUC: 0.77 vs. 0.68; c-statistic: 0.79 vs. 0.67). Decision rules were generated by RSF model to predict VT/VF post-diagnosis. Conclusions: Effective risk stratification in congenital LQTS can be achieved by clinical history, electrocardiographic indices, and different investigation results, irrespective of underlying genetic defects. A machine learning approach using RSF can improve risk prediction over traditional Cox regression models. |
format | Online Article Text |
id | pubmed-7892622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78926222021-02-20 Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses Tse, Gary Lee, Sharen Zhou, Jiandong Liu, Tong Wong, Ian Chi Kei Mak, Chloe Mok, Ngai Shing Jeevaratnam, Kamalan Zhang, Qingpeng Cheng, Shuk Han Wong, Wing Tak Front Cardiovasc Med Cardiovascular Medicine Introduction: Congenital long QT syndrome (LQTS) is a cardiac ion channelopathy that predisposes affected individuals to spontaneous ventricular tachycardia/fibrillation (VT/VF) and sudden cardiac death (SCD). The main aims of the study were to: (1) provide a description of the local epidemiology of LQTS, (2) identify significant risk factors of ventricular arrhythmias in this cohort, and (3) compare the performance of traditional Cox regression with that of random survival forests. Methods: This was a territory-wide retrospective cohort study of patients diagnosed with congenital LQTS between 1997 and 2019. The primary outcome was spontaneous VT/VF. Results: This study included 121 patients [median age of initial presentation: 20 (interquartile range: 8–44) years, 62% female] with a median follow-up of 88 (51–143) months. Genetic analysis identified novel mutations in KCNQ1, KCNH2, SCN5A, ANK2, CACNA1C, CAV3, and AKAP9. During follow-up, 23 patients developed VT/VF. Univariate Cox regression analysis revealed that age [hazard ratio (HR): 1.02 (1.01–1.04), P = 0.007; optimum cut-off: 19 years], presentation with syncope [HR: 3.86 (1.43–10.42), P = 0.008] or VT/VF [HR: 3.68 (1.62–8.37), P = 0.002] and the presence of PVCs [HR: 2.89 (1.22–6.83), P = 0.015] were significant predictors of spontaneous VT/VF. Only initial presentation with syncope remained significant after multivariate adjustment [HR: 3.58 (1.32–9.71), P = 0.011]. Random survival forest (RSF) model provided significant improvement in prediction performance over Cox regression (precision: 0.80 vs. 0.69; recall: 0.79 vs. 0.68; AUC: 0.77 vs. 0.68; c-statistic: 0.79 vs. 0.67). Decision rules were generated by RSF model to predict VT/VF post-diagnosis. Conclusions: Effective risk stratification in congenital LQTS can be achieved by clinical history, electrocardiographic indices, and different investigation results, irrespective of underlying genetic defects. A machine learning approach using RSF can improve risk prediction over traditional Cox regression models. Frontiers Media S.A. 2021-02-05 /pmc/articles/PMC7892622/ /pubmed/33614747 http://dx.doi.org/10.3389/fcvm.2021.608592 Text en Copyright © 2021 Tse, Lee, Zhou, Liu, Wong, Mak, Mok, Jeevaratnam, Zhang, Cheng and Wong. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Tse, Gary Lee, Sharen Zhou, Jiandong Liu, Tong Wong, Ian Chi Kei Mak, Chloe Mok, Ngai Shing Jeevaratnam, Kamalan Zhang, Qingpeng Cheng, Shuk Han Wong, Wing Tak Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses |
title | Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses |
title_full | Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses |
title_fullStr | Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses |
title_full_unstemmed | Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses |
title_short | Territory-Wide Chinese Cohort of Long QT Syndrome: Random Survival Forest and Cox Analyses |
title_sort | territory-wide chinese cohort of long qt syndrome: random survival forest and cox analyses |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892622/ https://www.ncbi.nlm.nih.gov/pubmed/33614747 http://dx.doi.org/10.3389/fcvm.2021.608592 |
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