Cargando…
Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multis...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892888/ https://www.ncbi.nlm.nih.gov/pubmed/33602914 http://dx.doi.org/10.1038/s41467-021-21373-3 |
_version_ | 1783652944707584000 |
---|---|
author | Chen, Chuyi Gu, Yuyang Philippe, Julien Zhang, Peiran Bachman, Hunter Zhang, Jinxin Mai, John Rufo, Joseph Rawls, John F. Davis, Erica E. Katsanis, Nicholas Huang, Tony Jun |
author_facet | Chen, Chuyi Gu, Yuyang Philippe, Julien Zhang, Peiran Bachman, Hunter Zhang, Jinxin Mai, John Rufo, Joseph Rawls, John F. Davis, Erica E. Katsanis, Nicholas Huang, Tony Jun |
author_sort | Chen, Chuyi |
collection | PubMed |
description | Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multispectral imaging and digital reconstruction of zebrafish larvae for quantitative phenotypic analysis. The acoustic-induced polarized vortex streaming achieves contactless and rapid (~1 s/rotation) rotation of zebrafish larvae. This enables multispectral imaging of the zebrafish body and internal organs from different viewing perspectives. Moreover, we develop a 3D reconstruction pipeline that yields accurate 3D models based on the multi-view images for quantitative evaluation of basic morphological characteristics and advanced combinations of metrics. With its contactless nature and advantages in speed and automation, our acoustofluidic rotational tweezing system has the potential to be a valuable asset in numerous fields, especially for developmental biology, small molecule screening in biochemistry, and pre-clinical drug development in pharmacology. |
format | Online Article Text |
id | pubmed-7892888 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78928882021-03-03 Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae Chen, Chuyi Gu, Yuyang Philippe, Julien Zhang, Peiran Bachman, Hunter Zhang, Jinxin Mai, John Rufo, Joseph Rawls, John F. Davis, Erica E. Katsanis, Nicholas Huang, Tony Jun Nat Commun Article Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multispectral imaging and digital reconstruction of zebrafish larvae for quantitative phenotypic analysis. The acoustic-induced polarized vortex streaming achieves contactless and rapid (~1 s/rotation) rotation of zebrafish larvae. This enables multispectral imaging of the zebrafish body and internal organs from different viewing perspectives. Moreover, we develop a 3D reconstruction pipeline that yields accurate 3D models based on the multi-view images for quantitative evaluation of basic morphological characteristics and advanced combinations of metrics. With its contactless nature and advantages in speed and automation, our acoustofluidic rotational tweezing system has the potential to be a valuable asset in numerous fields, especially for developmental biology, small molecule screening in biochemistry, and pre-clinical drug development in pharmacology. Nature Publishing Group UK 2021-02-18 /pmc/articles/PMC7892888/ /pubmed/33602914 http://dx.doi.org/10.1038/s41467-021-21373-3 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chen, Chuyi Gu, Yuyang Philippe, Julien Zhang, Peiran Bachman, Hunter Zhang, Jinxin Mai, John Rufo, Joseph Rawls, John F. Davis, Erica E. Katsanis, Nicholas Huang, Tony Jun Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
title | Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
title_full | Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
title_fullStr | Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
title_full_unstemmed | Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
title_short | Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
title_sort | acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892888/ https://www.ncbi.nlm.nih.gov/pubmed/33602914 http://dx.doi.org/10.1038/s41467-021-21373-3 |
work_keys_str_mv | AT chenchuyi acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT guyuyang acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT philippejulien acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT zhangpeiran acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT bachmanhunter acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT zhangjinxin acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT maijohn acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT rufojoseph acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT rawlsjohnf acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT davisericae acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT katsanisnicholas acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae AT huangtonyjun acoustofluidicrotationaltweezingenableshighspeedcontactlessmorphologicalphenotypingofzebrafishlarvae |