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Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae

Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multis...

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Autores principales: Chen, Chuyi, Gu, Yuyang, Philippe, Julien, Zhang, Peiran, Bachman, Hunter, Zhang, Jinxin, Mai, John, Rufo, Joseph, Rawls, John F., Davis, Erica E., Katsanis, Nicholas, Huang, Tony Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892888/
https://www.ncbi.nlm.nih.gov/pubmed/33602914
http://dx.doi.org/10.1038/s41467-021-21373-3
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author Chen, Chuyi
Gu, Yuyang
Philippe, Julien
Zhang, Peiran
Bachman, Hunter
Zhang, Jinxin
Mai, John
Rufo, Joseph
Rawls, John F.
Davis, Erica E.
Katsanis, Nicholas
Huang, Tony Jun
author_facet Chen, Chuyi
Gu, Yuyang
Philippe, Julien
Zhang, Peiran
Bachman, Hunter
Zhang, Jinxin
Mai, John
Rufo, Joseph
Rawls, John F.
Davis, Erica E.
Katsanis, Nicholas
Huang, Tony Jun
author_sort Chen, Chuyi
collection PubMed
description Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multispectral imaging and digital reconstruction of zebrafish larvae for quantitative phenotypic analysis. The acoustic-induced polarized vortex streaming achieves contactless and rapid (~1 s/rotation) rotation of zebrafish larvae. This enables multispectral imaging of the zebrafish body and internal organs from different viewing perspectives. Moreover, we develop a 3D reconstruction pipeline that yields accurate 3D models based on the multi-view images for quantitative evaluation of basic morphological characteristics and advanced combinations of metrics. With its contactless nature and advantages in speed and automation, our acoustofluidic rotational tweezing system has the potential to be a valuable asset in numerous fields, especially for developmental biology, small molecule screening in biochemistry, and pre-clinical drug development in pharmacology.
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spelling pubmed-78928882021-03-03 Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae Chen, Chuyi Gu, Yuyang Philippe, Julien Zhang, Peiran Bachman, Hunter Zhang, Jinxin Mai, John Rufo, Joseph Rawls, John F. Davis, Erica E. Katsanis, Nicholas Huang, Tony Jun Nat Commun Article Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multispectral imaging and digital reconstruction of zebrafish larvae for quantitative phenotypic analysis. The acoustic-induced polarized vortex streaming achieves contactless and rapid (~1 s/rotation) rotation of zebrafish larvae. This enables multispectral imaging of the zebrafish body and internal organs from different viewing perspectives. Moreover, we develop a 3D reconstruction pipeline that yields accurate 3D models based on the multi-view images for quantitative evaluation of basic morphological characteristics and advanced combinations of metrics. With its contactless nature and advantages in speed and automation, our acoustofluidic rotational tweezing system has the potential to be a valuable asset in numerous fields, especially for developmental biology, small molecule screening in biochemistry, and pre-clinical drug development in pharmacology. Nature Publishing Group UK 2021-02-18 /pmc/articles/PMC7892888/ /pubmed/33602914 http://dx.doi.org/10.1038/s41467-021-21373-3 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chen, Chuyi
Gu, Yuyang
Philippe, Julien
Zhang, Peiran
Bachman, Hunter
Zhang, Jinxin
Mai, John
Rufo, Joseph
Rawls, John F.
Davis, Erica E.
Katsanis, Nicholas
Huang, Tony Jun
Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
title Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
title_full Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
title_fullStr Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
title_full_unstemmed Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
title_short Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
title_sort acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7892888/
https://www.ncbi.nlm.nih.gov/pubmed/33602914
http://dx.doi.org/10.1038/s41467-021-21373-3
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