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Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets

BACKGROUND: “Quantile-dependent expressivity” occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g., C-reactive protein, CRP) is high or low relative to its distribution. We have previously shown that the heritabilities (h(2)) of coffee and alcohol consumption, po...

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Autor principal: Williams, Paul T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7894107/
https://www.ncbi.nlm.nih.gov/pubmed/33628645
http://dx.doi.org/10.7717/peerj.10914
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author Williams, Paul T.
author_facet Williams, Paul T.
author_sort Williams, Paul T.
collection PubMed
description BACKGROUND: “Quantile-dependent expressivity” occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g., C-reactive protein, CRP) is high or low relative to its distribution. We have previously shown that the heritabilities (h(2)) of coffee and alcohol consumption, postprandial lipemia, lipoproteins, leptin, adiponectin, adiposity, and pulmonary function are quantile-specific. Whether CRP heritability is quantile-specific is currently unknown. METHODS: Serum CRP concentrations from 2,036 sibships and 6,144 offspring-parent pairs were analyzed from the Framingham Heart Study. Quantile-specific heritability from full-sib (β(FS), h(2) ={(1 + 8r(spouse)β(FS))(0.5) − 1}/(2r(spouse))) and offspring-parent regression slopes (β(OP), h(2) = 2β(OP)/(1 + r(spouse))) were estimated robustly by quantile regression with nonparametric significance determined from 1,000 bootstrap samples. RESULTS: Quantile-specific h(2) (±SE) increased with increasing percentiles of the offspring’s age- and sex-adjusted CRP distribution when estimated from β(OP) (P(trend) = 0.0004): 0.02 ± 0.01 at the 10th, 0.04 ± 0.01 at the 25th, 0.10 ± 0.02 at the 50th, 0.20 ± 0.05 at the 75th, and 0.33 ± 0.10 at the 90th percentile, and when estimated from β(FS) (P(trend) = 0.0008): 0.03±0.01 at the 10th, 0.06 ± 0.02 at the 25th, 0.14 ± 0.03 at the 50th, 0.24 ± 0.05 at the 75th, and 0.53 ± 0.21 at the 90th percentile. CONCLUSION: Heritability of serum CRP concentration is quantile-specific, which may explain or contribute to the inflated CRP differences between CRP (rs1130864, rs1205, rs1800947, rs2794521, rs3091244), FGB (rs1800787), IL-6 (rs1800795, rs1800796), IL6R (rs8192284), TNF-α (rs1800629) and APOE genotypes following CABG surgery, stroke, TIA, curative esophagectomy, intensive periodontal therapy, or acute exercise; during acute coronary syndrome or Staphylococcus aureus bacteremia; or in patients with chronic rheumatoid arthritis, diabetes, peripheral arterial disease, ankylosing spondylitis, obesity or inflammatory bowel disease or who smoke.
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spelling pubmed-78941072021-02-23 Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets Williams, Paul T. PeerJ Genetics BACKGROUND: “Quantile-dependent expressivity” occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g., C-reactive protein, CRP) is high or low relative to its distribution. We have previously shown that the heritabilities (h(2)) of coffee and alcohol consumption, postprandial lipemia, lipoproteins, leptin, adiponectin, adiposity, and pulmonary function are quantile-specific. Whether CRP heritability is quantile-specific is currently unknown. METHODS: Serum CRP concentrations from 2,036 sibships and 6,144 offspring-parent pairs were analyzed from the Framingham Heart Study. Quantile-specific heritability from full-sib (β(FS), h(2) ={(1 + 8r(spouse)β(FS))(0.5) − 1}/(2r(spouse))) and offspring-parent regression slopes (β(OP), h(2) = 2β(OP)/(1 + r(spouse))) were estimated robustly by quantile regression with nonparametric significance determined from 1,000 bootstrap samples. RESULTS: Quantile-specific h(2) (±SE) increased with increasing percentiles of the offspring’s age- and sex-adjusted CRP distribution when estimated from β(OP) (P(trend) = 0.0004): 0.02 ± 0.01 at the 10th, 0.04 ± 0.01 at the 25th, 0.10 ± 0.02 at the 50th, 0.20 ± 0.05 at the 75th, and 0.33 ± 0.10 at the 90th percentile, and when estimated from β(FS) (P(trend) = 0.0008): 0.03±0.01 at the 10th, 0.06 ± 0.02 at the 25th, 0.14 ± 0.03 at the 50th, 0.24 ± 0.05 at the 75th, and 0.53 ± 0.21 at the 90th percentile. CONCLUSION: Heritability of serum CRP concentration is quantile-specific, which may explain or contribute to the inflated CRP differences between CRP (rs1130864, rs1205, rs1800947, rs2794521, rs3091244), FGB (rs1800787), IL-6 (rs1800795, rs1800796), IL6R (rs8192284), TNF-α (rs1800629) and APOE genotypes following CABG surgery, stroke, TIA, curative esophagectomy, intensive periodontal therapy, or acute exercise; during acute coronary syndrome or Staphylococcus aureus bacteremia; or in patients with chronic rheumatoid arthritis, diabetes, peripheral arterial disease, ankylosing spondylitis, obesity or inflammatory bowel disease or who smoke. PeerJ Inc. 2021-02-16 /pmc/articles/PMC7894107/ /pubmed/33628645 http://dx.doi.org/10.7717/peerj.10914 Text en © 2021 Williams https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Genetics
Williams, Paul T.
Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets
title Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets
title_full Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets
title_fullStr Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets
title_full_unstemmed Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets
title_short Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets
title_sort quantile-dependent expressivity of serum c-reactive protein concentrations in family sets
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7894107/
https://www.ncbi.nlm.nih.gov/pubmed/33628645
http://dx.doi.org/10.7717/peerj.10914
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