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Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory

In March 2020, with lockdown due to the coronavirus pandemic underway, the Francis Crick Institute (the Crick) regeared its research laboratories into clinical testing facilities. Two pipelines were established, one for polymerase chain reaction and the other for Serology. This article discusses the...

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Autores principales: Russell, Emma, Agua‐Doce, Ana, Carr, Lotte, Malla, Asha, Bartolovic, Kerol, Levi, Dina, Henderson, Carl, Das, Debipriya, Rhys, Hefin, Hobson, Philip, Purewal, Sukhveer, Riddell, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7894326/
https://www.ncbi.nlm.nih.gov/pubmed/33118310
http://dx.doi.org/10.1002/cyto.a.24248
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author Russell, Emma
Agua‐Doce, Ana
Carr, Lotte
Malla, Asha
Bartolovic, Kerol
Levi, Dina
Henderson, Carl
Das, Debipriya
Rhys, Hefin
Hobson, Philip
Purewal, Sukhveer
Riddell, Andrew
author_facet Russell, Emma
Agua‐Doce, Ana
Carr, Lotte
Malla, Asha
Bartolovic, Kerol
Levi, Dina
Henderson, Carl
Das, Debipriya
Rhys, Hefin
Hobson, Philip
Purewal, Sukhveer
Riddell, Andrew
author_sort Russell, Emma
collection PubMed
description In March 2020, with lockdown due to the coronavirus pandemic underway, the Francis Crick Institute (the Crick) regeared its research laboratories into clinical testing facilities. Two pipelines were established, one for polymerase chain reaction and the other for Serology. This article discusses the Cricks Flow Cytometry Science Technology Platform (Flow STP) role in setting up the Serology pipeline. Pipeline here referring to the overarching processes in place to facilitate the receipt of human sera through to a SARs‐CoV‐2 enzyme‐linked immunosorbent assay result. We examine the challenges that had to be overcome by a research laboratory to incorporate clinical diagnostics and the processes by which this was achieved. It describes the governance required to run the service, the design of the standard operating procedures (SOPs) and pipeline, the setting up of the assay, the validation required to show the robustness of the pipeline and reporting the results of the assay. Finally, as the lockdown started to ease in June 2020, it examines how this new service affects the daily running of the Flow STP. © 2020 The Authors. Cytometry Part A published by Wiley Periodicals LLC on behalf of International Society for Advancement of Cytometry.
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spelling pubmed-78943262021-03-02 Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory Russell, Emma Agua‐Doce, Ana Carr, Lotte Malla, Asha Bartolovic, Kerol Levi, Dina Henderson, Carl Das, Debipriya Rhys, Hefin Hobson, Philip Purewal, Sukhveer Riddell, Andrew Cytometry A SRL Communications In March 2020, with lockdown due to the coronavirus pandemic underway, the Francis Crick Institute (the Crick) regeared its research laboratories into clinical testing facilities. Two pipelines were established, one for polymerase chain reaction and the other for Serology. This article discusses the Cricks Flow Cytometry Science Technology Platform (Flow STP) role in setting up the Serology pipeline. Pipeline here referring to the overarching processes in place to facilitate the receipt of human sera through to a SARs‐CoV‐2 enzyme‐linked immunosorbent assay result. We examine the challenges that had to be overcome by a research laboratory to incorporate clinical diagnostics and the processes by which this was achieved. It describes the governance required to run the service, the design of the standard operating procedures (SOPs) and pipeline, the setting up of the assay, the validation required to show the robustness of the pipeline and reporting the results of the assay. Finally, as the lockdown started to ease in June 2020, it examines how this new service affects the daily running of the Flow STP. © 2020 The Authors. Cytometry Part A published by Wiley Periodicals LLC on behalf of International Society for Advancement of Cytometry. John Wiley & Sons, Inc. 2020-11-22 2021-01 /pmc/articles/PMC7894326/ /pubmed/33118310 http://dx.doi.org/10.1002/cyto.a.24248 Text en © 2020 The Authors. Cytometry Part A published by Wiley Periodicals LLC on behalf of International Society for Advancement of Cytometry. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle SRL Communications
Russell, Emma
Agua‐Doce, Ana
Carr, Lotte
Malla, Asha
Bartolovic, Kerol
Levi, Dina
Henderson, Carl
Das, Debipriya
Rhys, Hefin
Hobson, Philip
Purewal, Sukhveer
Riddell, Andrew
Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory
title Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory
title_full Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory
title_fullStr Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory
title_full_unstemmed Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory
title_short Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory
title_sort adapting to the coronavirus pandemic: building and incorporating a diagnostic pipeline in a shared resource laboratory
topic SRL Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7894326/
https://www.ncbi.nlm.nih.gov/pubmed/33118310
http://dx.doi.org/10.1002/cyto.a.24248
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