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Decision theory for precision therapy of breast cancer

Correctly estimating the hormone receptor status for estrogen (ER) and progesterone (PGR) is crucial for precision therapy of breast cancer. It is known that conventional diagnostics (immunohistochemistry, IHC) yields a significant rate of wrongly diagnosed receptor status. Here we demonstrate how D...

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Autores principales: Kenn, Michael, Cacsire Castillo-Tong, Dan, Singer, Christian F., Karch, Rudolf, Cibena, Michael, Koelbl, Heinz, Schreiner, Wolfgang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7895957/
https://www.ncbi.nlm.nih.gov/pubmed/33608588
http://dx.doi.org/10.1038/s41598-021-82418-7
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author Kenn, Michael
Cacsire Castillo-Tong, Dan
Singer, Christian F.
Karch, Rudolf
Cibena, Michael
Koelbl, Heinz
Schreiner, Wolfgang
author_facet Kenn, Michael
Cacsire Castillo-Tong, Dan
Singer, Christian F.
Karch, Rudolf
Cibena, Michael
Koelbl, Heinz
Schreiner, Wolfgang
author_sort Kenn, Michael
collection PubMed
description Correctly estimating the hormone receptor status for estrogen (ER) and progesterone (PGR) is crucial for precision therapy of breast cancer. It is known that conventional diagnostics (immunohistochemistry, IHC) yields a significant rate of wrongly diagnosed receptor status. Here we demonstrate how Dempster Shafer decision Theory (DST) enhances diagnostic precision by adding information from gene expression. We downloaded data of 3753 breast cancer patients from Gene Expression Omnibus. Information from IHC and gene expression was fused according to DST, and the clinical criterion for receptor positivity was re-modelled along DST. Receptor status predicted according to DST was compared with conventional assessment via IHC and gene-expression, and deviations were flagged as questionable. The survival of questionable cases turned out significantly worse (Kaplan Meier p < 1%) than for patients with receptor status confirmed by DST, indicating a substantial enhancement of diagnostic precision via DST. This study is not only relevant for precision medicine but also paves the way for introducing decision theory into OMICS data science.
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spelling pubmed-78959572021-02-24 Decision theory for precision therapy of breast cancer Kenn, Michael Cacsire Castillo-Tong, Dan Singer, Christian F. Karch, Rudolf Cibena, Michael Koelbl, Heinz Schreiner, Wolfgang Sci Rep Article Correctly estimating the hormone receptor status for estrogen (ER) and progesterone (PGR) is crucial for precision therapy of breast cancer. It is known that conventional diagnostics (immunohistochemistry, IHC) yields a significant rate of wrongly diagnosed receptor status. Here we demonstrate how Dempster Shafer decision Theory (DST) enhances diagnostic precision by adding information from gene expression. We downloaded data of 3753 breast cancer patients from Gene Expression Omnibus. Information from IHC and gene expression was fused according to DST, and the clinical criterion for receptor positivity was re-modelled along DST. Receptor status predicted according to DST was compared with conventional assessment via IHC and gene-expression, and deviations were flagged as questionable. The survival of questionable cases turned out significantly worse (Kaplan Meier p < 1%) than for patients with receptor status confirmed by DST, indicating a substantial enhancement of diagnostic precision via DST. This study is not only relevant for precision medicine but also paves the way for introducing decision theory into OMICS data science. Nature Publishing Group UK 2021-02-19 /pmc/articles/PMC7895957/ /pubmed/33608588 http://dx.doi.org/10.1038/s41598-021-82418-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kenn, Michael
Cacsire Castillo-Tong, Dan
Singer, Christian F.
Karch, Rudolf
Cibena, Michael
Koelbl, Heinz
Schreiner, Wolfgang
Decision theory for precision therapy of breast cancer
title Decision theory for precision therapy of breast cancer
title_full Decision theory for precision therapy of breast cancer
title_fullStr Decision theory for precision therapy of breast cancer
title_full_unstemmed Decision theory for precision therapy of breast cancer
title_short Decision theory for precision therapy of breast cancer
title_sort decision theory for precision therapy of breast cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7895957/
https://www.ncbi.nlm.nih.gov/pubmed/33608588
http://dx.doi.org/10.1038/s41598-021-82418-7
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