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Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica

Fasciola hepatica is a worldwide distributed zoonotic parasitic trematode, which causes a severe liver disease clinically known as fasciolasis in a large number of wild animals, several livestock species as well as humans, prevention and control of fasciolasis is made by massive use of anthelmintic...

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Autores principales: Miranda-Miranda, Estefan, Cossio-Bayugar, Raquel, Aguilar-Díaz, Hugo, Narváez-Padilla, Verónica, Sachman-Ruíz, Bernardo, Reynaud, Enrique
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7896153/
https://www.ncbi.nlm.nih.gov/pubmed/33659584
http://dx.doi.org/10.1016/j.dib.2021.106808
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author Miranda-Miranda, Estefan
Cossio-Bayugar, Raquel
Aguilar-Díaz, Hugo
Narváez-Padilla, Verónica
Sachman-Ruíz, Bernardo
Reynaud, Enrique
author_facet Miranda-Miranda, Estefan
Cossio-Bayugar, Raquel
Aguilar-Díaz, Hugo
Narváez-Padilla, Verónica
Sachman-Ruíz, Bernardo
Reynaud, Enrique
author_sort Miranda-Miranda, Estefan
collection PubMed
description Fasciola hepatica is a worldwide distributed zoonotic parasitic trematode, which causes a severe liver disease clinically known as fasciolasis in a large number of wild animals, several livestock species as well as humans, prevention and control of fasciolasis is made by massive use of anthelmintic compounds on livestock and inevitably this practice has led to the emergence of anthelmintic resistant Fasciola hepatica and there is a great scientific effort to elucidate the molecular basis of anthelmintic resistance of parasitic helminths in general and of Fasciola hepatica in particular that may lead to improved anthelmintic compounds. In our project, we sequenced the transcriptomes obtained from the anthelmintic response to Triclabendazole and Albendazole on four samples from sensitive and resistant strains of Fasciola hepatica on Illumina HiSeq 4000 Platform and generated about 10.03 Gb per sample. The average genome-mapping rate is 81.29% and the average gene-mapping rate is 62.81%. 30,105 genes were identified in which 28,669 of them are known genes and 1,237 of them are novel genes from novel coding transcripts without any known features, 20,743 novel RNA transcripts were identified of which 14,293 of them are previously unknown splicing event for known genes but no alternative splicing was detected, the remaining 5,213 transcripts were found to be long noncoding RNA.
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spelling pubmed-78961532021-03-02 Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica Miranda-Miranda, Estefan Cossio-Bayugar, Raquel Aguilar-Díaz, Hugo Narváez-Padilla, Verónica Sachman-Ruíz, Bernardo Reynaud, Enrique Data Brief Data Article Fasciola hepatica is a worldwide distributed zoonotic parasitic trematode, which causes a severe liver disease clinically known as fasciolasis in a large number of wild animals, several livestock species as well as humans, prevention and control of fasciolasis is made by massive use of anthelmintic compounds on livestock and inevitably this practice has led to the emergence of anthelmintic resistant Fasciola hepatica and there is a great scientific effort to elucidate the molecular basis of anthelmintic resistance of parasitic helminths in general and of Fasciola hepatica in particular that may lead to improved anthelmintic compounds. In our project, we sequenced the transcriptomes obtained from the anthelmintic response to Triclabendazole and Albendazole on four samples from sensitive and resistant strains of Fasciola hepatica on Illumina HiSeq 4000 Platform and generated about 10.03 Gb per sample. The average genome-mapping rate is 81.29% and the average gene-mapping rate is 62.81%. 30,105 genes were identified in which 28,669 of them are known genes and 1,237 of them are novel genes from novel coding transcripts without any known features, 20,743 novel RNA transcripts were identified of which 14,293 of them are previously unknown splicing event for known genes but no alternative splicing was detected, the remaining 5,213 transcripts were found to be long noncoding RNA. Elsevier 2021-02-04 /pmc/articles/PMC7896153/ /pubmed/33659584 http://dx.doi.org/10.1016/j.dib.2021.106808 Text en © 2021 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Miranda-Miranda, Estefan
Cossio-Bayugar, Raquel
Aguilar-Díaz, Hugo
Narváez-Padilla, Verónica
Sachman-Ruíz, Bernardo
Reynaud, Enrique
Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica
title Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica
title_full Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica
title_fullStr Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica
title_full_unstemmed Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica
title_short Transcriptome assembly dataset of anthelmintic response in Fasciola hepatica
title_sort transcriptome assembly dataset of anthelmintic response in fasciola hepatica
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7896153/
https://www.ncbi.nlm.nih.gov/pubmed/33659584
http://dx.doi.org/10.1016/j.dib.2021.106808
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