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Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework
Nuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T(2...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7897374/ https://www.ncbi.nlm.nih.gov/pubmed/33610164 http://dx.doi.org/10.1186/s13065-020-00731-0 |
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author | Date, Yasuhiro Wei, Feifei Tsuboi, Yuuri Ito, Kengo Sakata, Kenji Kikuchi, Jun |
author_facet | Date, Yasuhiro Wei, Feifei Tsuboi, Yuuri Ito, Kengo Sakata, Kenji Kikuchi, Jun |
author_sort | Date, Yasuhiro |
collection | PubMed |
description | Nuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T(2) relaxation curves in metabolomics studies involving the evaluation of metabolic mixtures, such as geographical origin determination and feature extraction by pattern recognition and data mining. In this study, we describe a data mining method for relaxometric data (i.e., relaxometric learning). This method is based on a machine learning algorithm supported by the analytical framework optimized for the relaxation curve analyses. In the analytical framework, we incorporated a variable optimization approach and bootstrap resampling-based matrixing to enhance the classification performance and balance the sample size between groups, respectively. The relaxometric learning enabled the extraction of features related to the physical properties of fish muscle and the determination of the geographical origin of the fish by improving the classification performance. Our results suggest that relaxometric learning is a powerful and versatile alternative to conventional metabolomics approaches for evaluating fleshiness of chemical mixtures in food and for other biological and chemical research requiring a nondestructive, cost-effective, and time-saving method. [Image: see text] |
format | Online Article Text |
id | pubmed-7897374 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-78973742021-02-22 Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework Date, Yasuhiro Wei, Feifei Tsuboi, Yuuri Ito, Kengo Sakata, Kenji Kikuchi, Jun BMC Chem Research Article Nuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T(2) relaxation curves in metabolomics studies involving the evaluation of metabolic mixtures, such as geographical origin determination and feature extraction by pattern recognition and data mining. In this study, we describe a data mining method for relaxometric data (i.e., relaxometric learning). This method is based on a machine learning algorithm supported by the analytical framework optimized for the relaxation curve analyses. In the analytical framework, we incorporated a variable optimization approach and bootstrap resampling-based matrixing to enhance the classification performance and balance the sample size between groups, respectively. The relaxometric learning enabled the extraction of features related to the physical properties of fish muscle and the determination of the geographical origin of the fish by improving the classification performance. Our results suggest that relaxometric learning is a powerful and versatile alternative to conventional metabolomics approaches for evaluating fleshiness of chemical mixtures in food and for other biological and chemical research requiring a nondestructive, cost-effective, and time-saving method. [Image: see text] Springer International Publishing 2021-02-20 /pmc/articles/PMC7897374/ /pubmed/33610164 http://dx.doi.org/10.1186/s13065-020-00731-0 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Date, Yasuhiro Wei, Feifei Tsuboi, Yuuri Ito, Kengo Sakata, Kenji Kikuchi, Jun Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework |
title | Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework |
title_full | Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework |
title_fullStr | Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework |
title_full_unstemmed | Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework |
title_short | Relaxometric learning: a pattern recognition method for T(2) relaxation curves based on machine learning supported by an analytical framework |
title_sort | relaxometric learning: a pattern recognition method for t(2) relaxation curves based on machine learning supported by an analytical framework |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7897374/ https://www.ncbi.nlm.nih.gov/pubmed/33610164 http://dx.doi.org/10.1186/s13065-020-00731-0 |
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