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Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak

Building an effective and highly usable epidemiology model presents two main challenges: finding the appropriate, realistic enough model that takes into account complex biological, social and environmental parameters and efficiently estimating the parameter values with which the model can accurately...

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Autores principales: Farkas, Csaba, Iclanzan, David, Olteán-Péter, Boróka, Vekov, Géza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7897412/
https://www.ncbi.nlm.nih.gov/pubmed/33643707
http://dx.doi.org/10.7717/peerj.10790
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author Farkas, Csaba
Iclanzan, David
Olteán-Péter, Boróka
Vekov, Géza
author_facet Farkas, Csaba
Iclanzan, David
Olteán-Péter, Boróka
Vekov, Géza
author_sort Farkas, Csaba
collection PubMed
description Building an effective and highly usable epidemiology model presents two main challenges: finding the appropriate, realistic enough model that takes into account complex biological, social and environmental parameters and efficiently estimating the parameter values with which the model can accurately match the available outbreak data, provide useful projections. The reproduction number of the novel coronavirus (SARS-CoV-2) has been found to vary over time, potentially being influenced by a multitude of factors such as varying control strategies, changes in public awareness and reaction or, as a recent study suggests, sensitivity to temperature or humidity changes. To take into consideration these constantly evolving factors, the paper introduces a time dynamic, humidity-dependent SEIR-type extended epidemiological model with range-defined parameters. Using primarily the historical data of the outbreak from Northern and Southern Italy and with the help of stochastic global optimization algorithms, we are able to determine a model parameter estimation that provides a high-quality fit to the data. The time-dependent contact rate showed a quick drop to a value slightly below 2. Applying the model for the COVID-19 outbreak in the northern region of Italy, we obtained parameters that suggest a slower shrinkage of the contact rate to a value slightly above 4. These findings indicate that model fitting and validation, even on a limited amount of available data, can provide useful insights and projections, uncover aspects that upon improvement might help mitigate the disease spreading.
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spelling pubmed-78974122021-02-25 Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak Farkas, Csaba Iclanzan, David Olteán-Péter, Boróka Vekov, Géza PeerJ Computational Biology Building an effective and highly usable epidemiology model presents two main challenges: finding the appropriate, realistic enough model that takes into account complex biological, social and environmental parameters and efficiently estimating the parameter values with which the model can accurately match the available outbreak data, provide useful projections. The reproduction number of the novel coronavirus (SARS-CoV-2) has been found to vary over time, potentially being influenced by a multitude of factors such as varying control strategies, changes in public awareness and reaction or, as a recent study suggests, sensitivity to temperature or humidity changes. To take into consideration these constantly evolving factors, the paper introduces a time dynamic, humidity-dependent SEIR-type extended epidemiological model with range-defined parameters. Using primarily the historical data of the outbreak from Northern and Southern Italy and with the help of stochastic global optimization algorithms, we are able to determine a model parameter estimation that provides a high-quality fit to the data. The time-dependent contact rate showed a quick drop to a value slightly below 2. Applying the model for the COVID-19 outbreak in the northern region of Italy, we obtained parameters that suggest a slower shrinkage of the contact rate to a value slightly above 4. These findings indicate that model fitting and validation, even on a limited amount of available data, can provide useful insights and projections, uncover aspects that upon improvement might help mitigate the disease spreading. PeerJ Inc. 2021-02-18 /pmc/articles/PMC7897412/ /pubmed/33643707 http://dx.doi.org/10.7717/peerj.10790 Text en © 2021 Farkas et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Computational Biology
Farkas, Csaba
Iclanzan, David
Olteán-Péter, Boróka
Vekov, Géza
Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
title Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
title_full Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
title_fullStr Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
title_full_unstemmed Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
title_short Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
title_sort estimation of parameters for a humidity-dependent compartmental model of the covid-19 outbreak
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7897412/
https://www.ncbi.nlm.nih.gov/pubmed/33643707
http://dx.doi.org/10.7717/peerj.10790
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