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New variants and in silico analyses in GRK1 associated Oguchi disease
Biallelic mutations in G‐Protein coupled receptor kinase 1 (GRK1) cause Oguchi disease, a rare subtype of congenital stationary night blindness (CSNB). The purpose of this study was to identify disease causing GRK1 variants and use in‐depth bioinformatic analyses to evaluate how their impact on prot...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7898643/ https://www.ncbi.nlm.nih.gov/pubmed/33252155 http://dx.doi.org/10.1002/humu.24140 |
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author | Poulter, James A. Gravett, Molly S. C. Taylor, Rachel L. Fujinami, Kaoru De Zaeytijd, Julie Bellingham, James Rehman, Atta Ur Hayashi, Takaaki Kondo, Mineo Rehman, Abdur Ansar, Muhammad Donnelly, Dan Toomes, Carmel Ali, Manir De Baere, Elfride Leroy, Bart P. Davies, Nigel P. Henderson, Robert H. Webster, Andrew R. Rivolta, Carlo Zeitz, Christina Mahroo, Omar A. Arno, Gavin Black, Graeme C. M. McKibbin, Martin Harris, Sarah A. Khan, Kamron N. Inglehearn, Chris F. |
author_facet | Poulter, James A. Gravett, Molly S. C. Taylor, Rachel L. Fujinami, Kaoru De Zaeytijd, Julie Bellingham, James Rehman, Atta Ur Hayashi, Takaaki Kondo, Mineo Rehman, Abdur Ansar, Muhammad Donnelly, Dan Toomes, Carmel Ali, Manir De Baere, Elfride Leroy, Bart P. Davies, Nigel P. Henderson, Robert H. Webster, Andrew R. Rivolta, Carlo Zeitz, Christina Mahroo, Omar A. Arno, Gavin Black, Graeme C. M. McKibbin, Martin Harris, Sarah A. Khan, Kamron N. Inglehearn, Chris F. |
author_sort | Poulter, James A. |
collection | PubMed |
description | Biallelic mutations in G‐Protein coupled receptor kinase 1 (GRK1) cause Oguchi disease, a rare subtype of congenital stationary night blindness (CSNB). The purpose of this study was to identify disease causing GRK1 variants and use in‐depth bioinformatic analyses to evaluate how their impact on protein structure could lead to pathogenicity. Patients’ genomic DNA was sequenced by whole genome, whole exome or focused exome sequencing. Disease associated variants, published and novel, were compared to nondisease associated missense variants. The impact of GRK1 missense variants at the protein level were then predicted using a series of computational tools. We identified twelve previously unpublished cases with biallelic disease associated GRK1 variants, including eight novel variants, and reviewed all GRK1 disease associated variants. Further structure‐based scoring revealed a hotspot for missense variants in the kinase domain. In addition, to aid future clinical interpretation, we identified the bioinformatics tools best able to differentiate disease associated from nondisease associated variants. We identified GRK1 variants in Oguchi disease patients and investigated how disease‐causing variants may impede protein function in‐silico. |
format | Online Article Text |
id | pubmed-7898643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78986432021-03-03 New variants and in silico analyses in GRK1 associated Oguchi disease Poulter, James A. Gravett, Molly S. C. Taylor, Rachel L. Fujinami, Kaoru De Zaeytijd, Julie Bellingham, James Rehman, Atta Ur Hayashi, Takaaki Kondo, Mineo Rehman, Abdur Ansar, Muhammad Donnelly, Dan Toomes, Carmel Ali, Manir De Baere, Elfride Leroy, Bart P. Davies, Nigel P. Henderson, Robert H. Webster, Andrew R. Rivolta, Carlo Zeitz, Christina Mahroo, Omar A. Arno, Gavin Black, Graeme C. M. McKibbin, Martin Harris, Sarah A. Khan, Kamron N. Inglehearn, Chris F. Hum Mutat Research Articles Biallelic mutations in G‐Protein coupled receptor kinase 1 (GRK1) cause Oguchi disease, a rare subtype of congenital stationary night blindness (CSNB). The purpose of this study was to identify disease causing GRK1 variants and use in‐depth bioinformatic analyses to evaluate how their impact on protein structure could lead to pathogenicity. Patients’ genomic DNA was sequenced by whole genome, whole exome or focused exome sequencing. Disease associated variants, published and novel, were compared to nondisease associated missense variants. The impact of GRK1 missense variants at the protein level were then predicted using a series of computational tools. We identified twelve previously unpublished cases with biallelic disease associated GRK1 variants, including eight novel variants, and reviewed all GRK1 disease associated variants. Further structure‐based scoring revealed a hotspot for missense variants in the kinase domain. In addition, to aid future clinical interpretation, we identified the bioinformatics tools best able to differentiate disease associated from nondisease associated variants. We identified GRK1 variants in Oguchi disease patients and investigated how disease‐causing variants may impede protein function in‐silico. John Wiley and Sons Inc. 2020-11-30 2021-02 /pmc/articles/PMC7898643/ /pubmed/33252155 http://dx.doi.org/10.1002/humu.24140 Text en © 2020 The Authors. Human Mutation published by Wiley Periodicals LLC This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Poulter, James A. Gravett, Molly S. C. Taylor, Rachel L. Fujinami, Kaoru De Zaeytijd, Julie Bellingham, James Rehman, Atta Ur Hayashi, Takaaki Kondo, Mineo Rehman, Abdur Ansar, Muhammad Donnelly, Dan Toomes, Carmel Ali, Manir De Baere, Elfride Leroy, Bart P. Davies, Nigel P. Henderson, Robert H. Webster, Andrew R. Rivolta, Carlo Zeitz, Christina Mahroo, Omar A. Arno, Gavin Black, Graeme C. M. McKibbin, Martin Harris, Sarah A. Khan, Kamron N. Inglehearn, Chris F. New variants and in silico analyses in GRK1 associated Oguchi disease |
title | New variants and in silico analyses in GRK1 associated Oguchi disease |
title_full | New variants and in silico analyses in GRK1 associated Oguchi disease |
title_fullStr | New variants and in silico analyses in GRK1 associated Oguchi disease |
title_full_unstemmed | New variants and in silico analyses in GRK1 associated Oguchi disease |
title_short | New variants and in silico analyses in GRK1 associated Oguchi disease |
title_sort | new variants and in silico analyses in grk1 associated oguchi disease |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7898643/ https://www.ncbi.nlm.nih.gov/pubmed/33252155 http://dx.doi.org/10.1002/humu.24140 |
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