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Comparative analysis of continuum angiogenesis models
Although discrete approaches are increasingly employed to model biological phenomena, it remains unclear how complex, population-level behaviours in such frameworks arise from the rules used to represent interactions between individuals. Discrete-to-continuum approaches, which are used to derive sys...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7900093/ https://www.ncbi.nlm.nih.gov/pubmed/33619643 http://dx.doi.org/10.1007/s00285-021-01570-w |
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author | Martinson, W. Duncan Ninomiya, Hirokazu Byrne, Helen M. Maini, Philip K. |
author_facet | Martinson, W. Duncan Ninomiya, Hirokazu Byrne, Helen M. Maini, Philip K. |
author_sort | Martinson, W. Duncan |
collection | PubMed |
description | Although discrete approaches are increasingly employed to model biological phenomena, it remains unclear how complex, population-level behaviours in such frameworks arise from the rules used to represent interactions between individuals. Discrete-to-continuum approaches, which are used to derive systems of coarse-grained equations describing the mean-field dynamics of a microscopic model, can provide insight into such emergent behaviour. Coarse-grained models often contain nonlinear terms that depend on the microscopic rules of the discrete framework, however, and such nonlinearities can make a model difficult to mathematically analyse. By contrast, models developed using phenomenological approaches are typically easier to investigate but have a more obscure connection to the underlying microscopic system. To our knowledge, there has been little work done to compare solutions of phenomenological and coarse-grained models. Here we address this problem in the context of angiogenesis (the creation of new blood vessels from existing vasculature). We compare asymptotic solutions of a classical, phenomenological “snail-trail” model for angiogenesis to solutions of a nonlinear system of partial differential equations (PDEs) derived via a systematic coarse-graining procedure (Pillay et al. in Phys Rev E 95(1):012410, 2017. https://doi.org/10.1103/PhysRevE.95.012410). For distinguished parameter regimes corresponding to chemotaxis-dominated cell movement and low branching rates, both continuum models reduce at leading order to identical PDEs within the domain interior. Numerical and analytical results confirm that pointwise differences between solutions to the two continuum models are small if these conditions hold, and demonstrate how perturbation methods can be used to determine when a phenomenological model provides a good approximation to a more detailed coarse-grained system for the same biological process. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-021-01570-w. |
format | Online Article Text |
id | pubmed-7900093 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-79000932021-03-05 Comparative analysis of continuum angiogenesis models Martinson, W. Duncan Ninomiya, Hirokazu Byrne, Helen M. Maini, Philip K. J Math Biol Article Although discrete approaches are increasingly employed to model biological phenomena, it remains unclear how complex, population-level behaviours in such frameworks arise from the rules used to represent interactions between individuals. Discrete-to-continuum approaches, which are used to derive systems of coarse-grained equations describing the mean-field dynamics of a microscopic model, can provide insight into such emergent behaviour. Coarse-grained models often contain nonlinear terms that depend on the microscopic rules of the discrete framework, however, and such nonlinearities can make a model difficult to mathematically analyse. By contrast, models developed using phenomenological approaches are typically easier to investigate but have a more obscure connection to the underlying microscopic system. To our knowledge, there has been little work done to compare solutions of phenomenological and coarse-grained models. Here we address this problem in the context of angiogenesis (the creation of new blood vessels from existing vasculature). We compare asymptotic solutions of a classical, phenomenological “snail-trail” model for angiogenesis to solutions of a nonlinear system of partial differential equations (PDEs) derived via a systematic coarse-graining procedure (Pillay et al. in Phys Rev E 95(1):012410, 2017. https://doi.org/10.1103/PhysRevE.95.012410). For distinguished parameter regimes corresponding to chemotaxis-dominated cell movement and low branching rates, both continuum models reduce at leading order to identical PDEs within the domain interior. Numerical and analytical results confirm that pointwise differences between solutions to the two continuum models are small if these conditions hold, and demonstrate how perturbation methods can be used to determine when a phenomenological model provides a good approximation to a more detailed coarse-grained system for the same biological process. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-021-01570-w. Springer Berlin Heidelberg 2021-02-23 2021 /pmc/articles/PMC7900093/ /pubmed/33619643 http://dx.doi.org/10.1007/s00285-021-01570-w Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Martinson, W. Duncan Ninomiya, Hirokazu Byrne, Helen M. Maini, Philip K. Comparative analysis of continuum angiogenesis models |
title | Comparative analysis of continuum angiogenesis models |
title_full | Comparative analysis of continuum angiogenesis models |
title_fullStr | Comparative analysis of continuum angiogenesis models |
title_full_unstemmed | Comparative analysis of continuum angiogenesis models |
title_short | Comparative analysis of continuum angiogenesis models |
title_sort | comparative analysis of continuum angiogenesis models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7900093/ https://www.ncbi.nlm.nih.gov/pubmed/33619643 http://dx.doi.org/10.1007/s00285-021-01570-w |
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