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SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
RATIONALE: High‐resolution mass spectrometry based non‐targeted screening has a huge potential for applications in environmental sciences, engineering and regulation. However, it produces large datasets for which full appropriate processing is a real challenge; the development of processing software...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7900974/ https://www.ncbi.nlm.nih.gov/pubmed/33283361 http://dx.doi.org/10.1002/rcm.9015 |
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author | Nicol, Edith Xu, Yao Varga, Zsuzsanna Kinani, Said Bouchonnet, Stéphane Lavielle, Marc |
author_facet | Nicol, Edith Xu, Yao Varga, Zsuzsanna Kinani, Said Bouchonnet, Stéphane Lavielle, Marc |
author_sort | Nicol, Edith |
collection | PubMed |
description | RATIONALE: High‐resolution mass spectrometry based non‐targeted screening has a huge potential for applications in environmental sciences, engineering and regulation. However, it produces large datasets for which full appropriate processing is a real challenge; the development of processing software is the last building‐block to enable large‐scale use of this approach. METHODS: A new software application, SPIX, has been developed to extract relevant information from high‐resolution mass spectral datasets. Dealing with intrinsic sample variability and reducing operator subjectivity, it opens up opportunities and promising prospects in many areas of analytical chemistry. SPIX is freely available at: http://spix.webpopix.org. RESULTS: Two features of the software are presented in the field of environmental analysis. An example illustrates how SPIX reveals photodegradation reactions in wastewater by fitting kinetic models to significant changes in ion abundance over time. A second example shows the ability of SPIX to detect photoproducts at trace amounts in river water, through comparison of datasets from samples taken before and after irradiation. CONCLUSIONS: SPIX has shown its ability to reveal relevant modifications between two series of large datasets, allowing, for instance, the study of the consequences of a given event on a complex substrate. Most of all – and it is to our knowledge the only software currently available allowing this – it can reveal and monitor any kind of reaction in all types of mixture. |
format | Online Article Text |
id | pubmed-7900974 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79009742021-03-03 SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset Nicol, Edith Xu, Yao Varga, Zsuzsanna Kinani, Said Bouchonnet, Stéphane Lavielle, Marc Rapid Commun Mass Spectrom Research Articles RATIONALE: High‐resolution mass spectrometry based non‐targeted screening has a huge potential for applications in environmental sciences, engineering and regulation. However, it produces large datasets for which full appropriate processing is a real challenge; the development of processing software is the last building‐block to enable large‐scale use of this approach. METHODS: A new software application, SPIX, has been developed to extract relevant information from high‐resolution mass spectral datasets. Dealing with intrinsic sample variability and reducing operator subjectivity, it opens up opportunities and promising prospects in many areas of analytical chemistry. SPIX is freely available at: http://spix.webpopix.org. RESULTS: Two features of the software are presented in the field of environmental analysis. An example illustrates how SPIX reveals photodegradation reactions in wastewater by fitting kinetic models to significant changes in ion abundance over time. A second example shows the ability of SPIX to detect photoproducts at trace amounts in river water, through comparison of datasets from samples taken before and after irradiation. CONCLUSIONS: SPIX has shown its ability to reveal relevant modifications between two series of large datasets, allowing, for instance, the study of the consequences of a given event on a complex substrate. Most of all – and it is to our knowledge the only software currently available allowing this – it can reveal and monitor any kind of reaction in all types of mixture. John Wiley and Sons Inc. 2021-01-20 2021-03-30 /pmc/articles/PMC7900974/ /pubmed/33283361 http://dx.doi.org/10.1002/rcm.9015 Text en © 2020 The Authors. Rapid Communications in Mass Spectrometry published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Nicol, Edith Xu, Yao Varga, Zsuzsanna Kinani, Said Bouchonnet, Stéphane Lavielle, Marc SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
title | SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
title_full | SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
title_fullStr | SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
title_full_unstemmed | SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
title_short | SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
title_sort | spix: a new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7900974/ https://www.ncbi.nlm.nih.gov/pubmed/33283361 http://dx.doi.org/10.1002/rcm.9015 |
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