Cargando…

SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset

RATIONALE: High‐resolution mass spectrometry based non‐targeted screening has a huge potential for applications in environmental sciences, engineering and regulation. However, it produces large datasets for which full appropriate processing is a real challenge; the development of processing software...

Descripción completa

Detalles Bibliográficos
Autores principales: Nicol, Edith, Xu, Yao, Varga, Zsuzsanna, Kinani, Said, Bouchonnet, Stéphane, Lavielle, Marc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7900974/
https://www.ncbi.nlm.nih.gov/pubmed/33283361
http://dx.doi.org/10.1002/rcm.9015
_version_ 1783654310087753728
author Nicol, Edith
Xu, Yao
Varga, Zsuzsanna
Kinani, Said
Bouchonnet, Stéphane
Lavielle, Marc
author_facet Nicol, Edith
Xu, Yao
Varga, Zsuzsanna
Kinani, Said
Bouchonnet, Stéphane
Lavielle, Marc
author_sort Nicol, Edith
collection PubMed
description RATIONALE: High‐resolution mass spectrometry based non‐targeted screening has a huge potential for applications in environmental sciences, engineering and regulation. However, it produces large datasets for which full appropriate processing is a real challenge; the development of processing software is the last building‐block to enable large‐scale use of this approach. METHODS: A new software application, SPIX, has been developed to extract relevant information from high‐resolution mass spectral datasets. Dealing with intrinsic sample variability and reducing operator subjectivity, it opens up opportunities and promising prospects in many areas of analytical chemistry. SPIX is freely available at: http://spix.webpopix.org. RESULTS: Two features of the software are presented in the field of environmental analysis. An example illustrates how SPIX reveals photodegradation reactions in wastewater by fitting kinetic models to significant changes in ion abundance over time. A second example shows the ability of SPIX to detect photoproducts at trace amounts in river water, through comparison of datasets from samples taken before and after irradiation. CONCLUSIONS: SPIX has shown its ability to reveal relevant modifications between two series of large datasets, allowing, for instance, the study of the consequences of a given event on a complex substrate. Most of all – and it is to our knowledge the only software currently available allowing this – it can reveal and monitor any kind of reaction in all types of mixture.
format Online
Article
Text
id pubmed-7900974
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-79009742021-03-03 SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset Nicol, Edith Xu, Yao Varga, Zsuzsanna Kinani, Said Bouchonnet, Stéphane Lavielle, Marc Rapid Commun Mass Spectrom Research Articles RATIONALE: High‐resolution mass spectrometry based non‐targeted screening has a huge potential for applications in environmental sciences, engineering and regulation. However, it produces large datasets for which full appropriate processing is a real challenge; the development of processing software is the last building‐block to enable large‐scale use of this approach. METHODS: A new software application, SPIX, has been developed to extract relevant information from high‐resolution mass spectral datasets. Dealing with intrinsic sample variability and reducing operator subjectivity, it opens up opportunities and promising prospects in many areas of analytical chemistry. SPIX is freely available at: http://spix.webpopix.org. RESULTS: Two features of the software are presented in the field of environmental analysis. An example illustrates how SPIX reveals photodegradation reactions in wastewater by fitting kinetic models to significant changes in ion abundance over time. A second example shows the ability of SPIX to detect photoproducts at trace amounts in river water, through comparison of datasets from samples taken before and after irradiation. CONCLUSIONS: SPIX has shown its ability to reveal relevant modifications between two series of large datasets, allowing, for instance, the study of the consequences of a given event on a complex substrate. Most of all – and it is to our knowledge the only software currently available allowing this – it can reveal and monitor any kind of reaction in all types of mixture. John Wiley and Sons Inc. 2021-01-20 2021-03-30 /pmc/articles/PMC7900974/ /pubmed/33283361 http://dx.doi.org/10.1002/rcm.9015 Text en © 2020 The Authors. Rapid Communications in Mass Spectrometry published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Nicol, Edith
Xu, Yao
Varga, Zsuzsanna
Kinani, Said
Bouchonnet, Stéphane
Lavielle, Marc
SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
title SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
title_full SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
title_fullStr SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
title_full_unstemmed SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
title_short SPIX: A new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
title_sort spix: a new software package to reveal chemical reactions at trace amounts in very complex mixtures from high‐resolution mass spectra dataset
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7900974/
https://www.ncbi.nlm.nih.gov/pubmed/33283361
http://dx.doi.org/10.1002/rcm.9015
work_keys_str_mv AT nicoledith spixanewsoftwarepackagetorevealchemicalreactionsattraceamountsinverycomplexmixturesfromhighresolutionmassspectradataset
AT xuyao spixanewsoftwarepackagetorevealchemicalreactionsattraceamountsinverycomplexmixturesfromhighresolutionmassspectradataset
AT vargazsuzsanna spixanewsoftwarepackagetorevealchemicalreactionsattraceamountsinverycomplexmixturesfromhighresolutionmassspectradataset
AT kinanisaid spixanewsoftwarepackagetorevealchemicalreactionsattraceamountsinverycomplexmixturesfromhighresolutionmassspectradataset
AT bouchonnetstephane spixanewsoftwarepackagetorevealchemicalreactionsattraceamountsinverycomplexmixturesfromhighresolutionmassspectradataset
AT laviellemarc spixanewsoftwarepackagetorevealchemicalreactionsattraceamountsinverycomplexmixturesfromhighresolutionmassspectradataset