Cargando…

Identification of RNA pseudouridine sites using deep learning approaches

Pseudouridine(Ψ) is widely popular among various RNA modifications which have been confirmed to occur in rRNA, mRNA, tRNA, and nuclear/nucleolar RNA. Hence, identifying them has vital significance in academic research, drug development and gene therapies. Several laboratory techniques for Ψ identifi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Aziz, Abu Zahid Bin, Hasan, Md. Al Mehedi, Shin, Jungpil
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7901771/ https://www.ncbi.nlm.nih.gov/pubmed/33621235 http://dx.doi.org/10.1371/journal.pone.0247511

Ejemplares similares

PseUdeep: RNA Pseudouridine Site Identification with Deep Learning Algorithm
por: Zhuang, Jujuan, et al.
Publicado: (2021)

Deep Learning Based Air-Writing Recognition with the Choice of Proper Interpolation Technique
por: Abir, Fuad Al, et al.
Publicado: (2021)

Identification of key candidate genes for IgA nephropathy using machine learning and statistics based bioinformatics models
por: Al Mehedi Hasan, Md., et al.
Publicado: (2022)

Differentially expressed discriminative genes and significant meta-hub genes based key genes identification for hepatocellular carcinoma using statistical machine learning
por: Hasan, Md. Al Mehedi, et al.
Publicado: (2023)

Fitness Movement Types and Completeness Detection Using a Transfer-Learning-Based Deep Neural Network
por: Chen, Kuan-Yu, et al.
Publicado: (2022)

MU-PseUDeep: A deep learning method for prediction of pseudouridine sites
por: Khan, Saad M., et al.
Publicado: (2020)

PseUI: Pseudouridine sites identification based on RNA sequence information
por: He, Jingjing, et al.
Publicado: (2018)

iRNA-PseU: Identifying RNA pseudouridine sites
por: Chen, Wei, et al.
Publicado: (2016)

PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional Annotation
por: Song, Bowen, et al.
Publicado: (2020)

A Feature Fusion Predictor for RNA Pseudouridine Sites with Particle Swarm Optimizer Based Feature Selection and Ensemble Learning Approach
por: Wang, Xiao, et al.
Publicado: (2021)

PseU-ST: A new stacked ensemble-learning method for identifying RNA pseudouridine sites
por: Zhang, Xinru, et al.
Publicado: (2023)

American Sign Language Alphabet Recognition by Extracting Feature from Hand Pose Estimation
por: Shin, Jungpil, et al.
Publicado: (2021)

RF-PseU: A Random Forest Predictor for RNA Pseudouridine Sites
por: Lv, Zhibin, et al.
Publicado: (2020)

iPseU-CNN: Identifying RNA Pseudouridine Sites Using Convolutional Neural Networks
por: Tahir, Muhammad, et al.
Publicado: (2019)

Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis products
por: Taucher, Monika, et al.
Publicado: (2011)

Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae
por: Lovejoy, Alexander F., et al.
Publicado: (2014)

N(1)-methyl-pseudouridine is incorporated with higher fidelity than pseudouridine in synthetic RNAs
por: Chen, Tien-Hao, et al.
Publicado: (2022)

LLDNet: A Lightweight Lane Detection Approach for Autonomous Cars Using Deep Learning
por: Khan, Md. Al-Masrur, et al.
Publicado: (2022)

Urinary pseudouridine excretion in myelomatosis.
por: Sørensen, S. H., et al.
Publicado: (1985)

iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features
por: Nguyen-Vo, Thanh-Hoang, et al.
Publicado: (2019)

Pseudouridine and N(6)-methyladenosine modifications weaken PUF protein/RNA interactions
por: Vaidyanathan, Pavanapuresan P., et al.
Publicado: (2017)

Formation of the conserved pseudouridine at position 55 in archaeal tRNA
por: Roovers, Martine, et al.
Publicado: (2006)

mRNA structure determines modification by pseudouridine synthase 1
por: Carlile, Thomas M., et al.
Publicado: (2019)

Is There Any Sequence Feature in the RNA Pseudouridine Modification Prediction Problem?
por: Dou, Lijun, et al.
Publicado: (2019)

The Critical Contribution of Pseudouridine to mRNA COVID-19 Vaccines
por: Morais, Pedro, et al.
Publicado: (2021)

Pseudouridine guides germline small RNA transport and epigenetic inheritance
por: Herridge, Rowan P, et al.
Publicado: (2023)

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
por: Carlile, Thomas M., et al.
Publicado: (2014)

NTyroSite: Computational Identification of Protein Nitrotyrosine Sites Using Sequence Evolutionary Features
por: Hasan, Md. Mehedi, et al.
Publicado: (2018)

The contribution of pseudouridine to stabilities and structure of RNAs
por: Kierzek, Elzbieta, et al.
Publicado: (2014)

Identification and functional implications of pseudouridine RNA modification on small noncoding RNAs in the mammalian pathogen Trypanosoma brucei
por: Rajan, K. Shanmugha, et al.
Publicado: (2022)

Sensitive and quantitative probing of pseudouridine modification in mRNA and long noncoding RNA
por: Zhang, Wen, et al.
Publicado: (2019)

Substrate-binding loop interactions with pseudouridine trigger conformational changes that promote catalytic efficiency of pseudouridine kinase PUKI
por: Kim, Sang-Hoon, et al.
Publicado: (2022)

Membrane-dependent relief of translation elongation arrest on pseudouridine- and N(1)-methyl-pseudouridine-modified mRNAs
por: Svitkin, Yuri V, et al.
Publicado: (2021)

PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features
por: Song, Bowen, et al.
Publicado: (2020)

Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation
por: Anderson, Bart R., et al.
Publicado: (2010)

A mass spectrometry-based method for direct determination of pseudouridine in RNA
por: Yamauchi, Yoshio, et al.
Publicado: (2016)

The Pseudouridine Synthase RPUSD4 Is an Essential Component of Mitochondrial RNA Granules
por: Zaganelli, Sofia, et al.
Publicado: (2017)

The plant epitranscriptome: revisiting pseudouridine and 2′‐O‐methyl RNA modifications
por: Ramakrishnan, Muthusamy, et al.
Publicado: (2022)

Recent Development of Machine Learning Methods in Microbial Phosphorylation Sites
por: Rashid, Md. Mamunur, et al.
Publicado: (2020)

Genome-Wide Identification and Expression Analysis of Pseudouridine Synthase Family in Arabidopsis and Maize
por: Xie, Yuting, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_o88771cl6sflo13o8ckkcdjdgf