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Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing

Long and ultra-long read DNA sequencing technologies require high molecular weight DNA with high quality and sufficient quantity, which could be challenging to obtain from recalcitrant plant tissues. We describe a protocol to isolate ultra-long DNA from 12 species for ultra-long read genome sequenci...

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Detalles Bibliográficos
Autores principales: Zerpa-Catanho, Dessireé, Zhang, Xiaodan, Song, Jinjin, Hernandez, Alvaro G., Ming, Ray
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902544/
https://www.ncbi.nlm.nih.gov/pubmed/33665623
http://dx.doi.org/10.1016/j.xpro.2021.100343
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author Zerpa-Catanho, Dessireé
Zhang, Xiaodan
Song, Jinjin
Hernandez, Alvaro G.
Ming, Ray
author_facet Zerpa-Catanho, Dessireé
Zhang, Xiaodan
Song, Jinjin
Hernandez, Alvaro G.
Ming, Ray
author_sort Zerpa-Catanho, Dessireé
collection PubMed
description Long and ultra-long read DNA sequencing technologies require high molecular weight DNA with high quality and sufficient quantity, which could be challenging to obtain from recalcitrant plant tissues. We describe a protocol to isolate ultra-long DNA from 12 species for ultra-long read genome sequencing. A suitable nuclei lysis buffer is critical for DNA quality and yield. This protocol will enable individual labs to isolate high molecular weight DNA at a rapid pace with low cost from a variety of plant species. For complete information on the use and execution of this protocol, please refer to: Zhang et al. (2020).
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spelling pubmed-79025442021-03-03 Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing Zerpa-Catanho, Dessireé Zhang, Xiaodan Song, Jinjin Hernandez, Alvaro G. Ming, Ray STAR Protoc Protocol Long and ultra-long read DNA sequencing technologies require high molecular weight DNA with high quality and sufficient quantity, which could be challenging to obtain from recalcitrant plant tissues. We describe a protocol to isolate ultra-long DNA from 12 species for ultra-long read genome sequencing. A suitable nuclei lysis buffer is critical for DNA quality and yield. This protocol will enable individual labs to isolate high molecular weight DNA at a rapid pace with low cost from a variety of plant species. For complete information on the use and execution of this protocol, please refer to: Zhang et al. (2020). Elsevier 2021-02-17 /pmc/articles/PMC7902544/ /pubmed/33665623 http://dx.doi.org/10.1016/j.xpro.2021.100343 Text en © 2021 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Protocol
Zerpa-Catanho, Dessireé
Zhang, Xiaodan
Song, Jinjin
Hernandez, Alvaro G.
Ming, Ray
Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
title Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
title_full Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
title_fullStr Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
title_full_unstemmed Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
title_short Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
title_sort ultra-long dna molecule isolation from plant nuclei for ultra-long read genome sequencing
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902544/
https://www.ncbi.nlm.nih.gov/pubmed/33665623
http://dx.doi.org/10.1016/j.xpro.2021.100343
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