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Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing
Long and ultra-long read DNA sequencing technologies require high molecular weight DNA with high quality and sufficient quantity, which could be challenging to obtain from recalcitrant plant tissues. We describe a protocol to isolate ultra-long DNA from 12 species for ultra-long read genome sequenci...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902544/ https://www.ncbi.nlm.nih.gov/pubmed/33665623 http://dx.doi.org/10.1016/j.xpro.2021.100343 |
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author | Zerpa-Catanho, Dessireé Zhang, Xiaodan Song, Jinjin Hernandez, Alvaro G. Ming, Ray |
author_facet | Zerpa-Catanho, Dessireé Zhang, Xiaodan Song, Jinjin Hernandez, Alvaro G. Ming, Ray |
author_sort | Zerpa-Catanho, Dessireé |
collection | PubMed |
description | Long and ultra-long read DNA sequencing technologies require high molecular weight DNA with high quality and sufficient quantity, which could be challenging to obtain from recalcitrant plant tissues. We describe a protocol to isolate ultra-long DNA from 12 species for ultra-long read genome sequencing. A suitable nuclei lysis buffer is critical for DNA quality and yield. This protocol will enable individual labs to isolate high molecular weight DNA at a rapid pace with low cost from a variety of plant species. For complete information on the use and execution of this protocol, please refer to: Zhang et al. (2020). |
format | Online Article Text |
id | pubmed-7902544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-79025442021-03-03 Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing Zerpa-Catanho, Dessireé Zhang, Xiaodan Song, Jinjin Hernandez, Alvaro G. Ming, Ray STAR Protoc Protocol Long and ultra-long read DNA sequencing technologies require high molecular weight DNA with high quality and sufficient quantity, which could be challenging to obtain from recalcitrant plant tissues. We describe a protocol to isolate ultra-long DNA from 12 species for ultra-long read genome sequencing. A suitable nuclei lysis buffer is critical for DNA quality and yield. This protocol will enable individual labs to isolate high molecular weight DNA at a rapid pace with low cost from a variety of plant species. For complete information on the use and execution of this protocol, please refer to: Zhang et al. (2020). Elsevier 2021-02-17 /pmc/articles/PMC7902544/ /pubmed/33665623 http://dx.doi.org/10.1016/j.xpro.2021.100343 Text en © 2021 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol Zerpa-Catanho, Dessireé Zhang, Xiaodan Song, Jinjin Hernandez, Alvaro G. Ming, Ray Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing |
title | Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing |
title_full | Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing |
title_fullStr | Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing |
title_full_unstemmed | Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing |
title_short | Ultra-long DNA molecule isolation from plant nuclei for ultra-long read genome sequencing |
title_sort | ultra-long dna molecule isolation from plant nuclei for ultra-long read genome sequencing |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902544/ https://www.ncbi.nlm.nih.gov/pubmed/33665623 http://dx.doi.org/10.1016/j.xpro.2021.100343 |
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