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Automated discovery of a robust interatomic potential for aluminum
Machine learning, trained on quantum mechanics (QM) calculations, is a powerful tool for modeling potential energy surfaces. A critical factor is the quality and diversity of the training dataset. Here we present a highly automated approach to dataset construction and demonstrate the method by build...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902823/ https://www.ncbi.nlm.nih.gov/pubmed/33623036 http://dx.doi.org/10.1038/s41467-021-21376-0 |
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author | Smith, Justin S. Nebgen, Benjamin Mathew, Nithin Chen, Jie Lubbers, Nicholas Burakovsky, Leonid Tretiak, Sergei Nam, Hai Ah Germann, Timothy Fensin, Saryu Barros, Kipton |
author_facet | Smith, Justin S. Nebgen, Benjamin Mathew, Nithin Chen, Jie Lubbers, Nicholas Burakovsky, Leonid Tretiak, Sergei Nam, Hai Ah Germann, Timothy Fensin, Saryu Barros, Kipton |
author_sort | Smith, Justin S. |
collection | PubMed |
description | Machine learning, trained on quantum mechanics (QM) calculations, is a powerful tool for modeling potential energy surfaces. A critical factor is the quality and diversity of the training dataset. Here we present a highly automated approach to dataset construction and demonstrate the method by building a potential for elemental aluminum (ANI-Al). In our active learning scheme, the ML potential under development is used to drive non-equilibrium molecular dynamics simulations with time-varying applied temperatures. Whenever a configuration is reached for which the ML uncertainty is large, new QM data is collected. The ML model is periodically retrained on all available QM data. The final ANI-Al potential makes very accurate predictions of radial distribution function in melt, liquid-solid coexistence curve, and crystal properties such as defect energies and barriers. We perform a 1.3M atom shock simulation and show that ANI-Al force predictions shine in their agreement with new reference DFT calculations. |
format | Online Article Text |
id | pubmed-7902823 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79028232021-03-11 Automated discovery of a robust interatomic potential for aluminum Smith, Justin S. Nebgen, Benjamin Mathew, Nithin Chen, Jie Lubbers, Nicholas Burakovsky, Leonid Tretiak, Sergei Nam, Hai Ah Germann, Timothy Fensin, Saryu Barros, Kipton Nat Commun Article Machine learning, trained on quantum mechanics (QM) calculations, is a powerful tool for modeling potential energy surfaces. A critical factor is the quality and diversity of the training dataset. Here we present a highly automated approach to dataset construction and demonstrate the method by building a potential for elemental aluminum (ANI-Al). In our active learning scheme, the ML potential under development is used to drive non-equilibrium molecular dynamics simulations with time-varying applied temperatures. Whenever a configuration is reached for which the ML uncertainty is large, new QM data is collected. The ML model is periodically retrained on all available QM data. The final ANI-Al potential makes very accurate predictions of radial distribution function in melt, liquid-solid coexistence curve, and crystal properties such as defect energies and barriers. We perform a 1.3M atom shock simulation and show that ANI-Al force predictions shine in their agreement with new reference DFT calculations. Nature Publishing Group UK 2021-02-23 /pmc/articles/PMC7902823/ /pubmed/33623036 http://dx.doi.org/10.1038/s41467-021-21376-0 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Smith, Justin S. Nebgen, Benjamin Mathew, Nithin Chen, Jie Lubbers, Nicholas Burakovsky, Leonid Tretiak, Sergei Nam, Hai Ah Germann, Timothy Fensin, Saryu Barros, Kipton Automated discovery of a robust interatomic potential for aluminum |
title | Automated discovery of a robust interatomic potential for aluminum |
title_full | Automated discovery of a robust interatomic potential for aluminum |
title_fullStr | Automated discovery of a robust interatomic potential for aluminum |
title_full_unstemmed | Automated discovery of a robust interatomic potential for aluminum |
title_short | Automated discovery of a robust interatomic potential for aluminum |
title_sort | automated discovery of a robust interatomic potential for aluminum |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902823/ https://www.ncbi.nlm.nih.gov/pubmed/33623036 http://dx.doi.org/10.1038/s41467-021-21376-0 |
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