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Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL)
Although immunotherapy is a potential strategy to resist cancers, due to the inadequate acknowledge, this treatment is not always effective for diffuse large B cell lymphoma (DLBCL) patients. Based on the current situation, it is critical to systematically investigate the immune pattern. According t...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902938/ https://www.ncbi.nlm.nih.gov/pubmed/33643388 http://dx.doi.org/10.3389/fgene.2021.625414 |
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author | Feng, Pengcheng Li, Hongxia Pei, Jinhong Huang, Yan Li, Guixia |
author_facet | Feng, Pengcheng Li, Hongxia Pei, Jinhong Huang, Yan Li, Guixia |
author_sort | Feng, Pengcheng |
collection | PubMed |
description | Although immunotherapy is a potential strategy to resist cancers, due to the inadequate acknowledge, this treatment is not always effective for diffuse large B cell lymphoma (DLBCL) patients. Based on the current situation, it is critical to systematically investigate the immune pattern. According to the result of univariate and multivariate cox proportional hazards, LASSO regression and Kaplan-Meier survival analysis on immune-related genes (IRGs), a prognostic signature, containing 14 IRGs (AQP9, LMBR1L, FGF20, TANK, CRP, ORM1, JAK1, BACH2, MTCP1, IFITM1, TNFSF10, FGF12, RFX5, and LAP3), was built. This model was validated by external data, and performed well. DLBCL patients were divided into low- and high-risk groups, according to risk scores from risk formula. The results of CIBERSORT showed that different immune status and infiltration pattern were observed in these two groups. Gene set enrichment analysis (GSEA) indicated 12 signaling pathways were significantly enriched in the high-risk group, such as natural killer cell-mediated cytotoxicity, toll-like receptor signaling pathway, and so on. In summary, 14 clinically significant IRGs were screened to build a risk score formula. This formula was an accurate tool to provide a certain basis for the treatment of DLBCL patients. |
format | Online Article Text |
id | pubmed-7902938 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79029382021-02-25 Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) Feng, Pengcheng Li, Hongxia Pei, Jinhong Huang, Yan Li, Guixia Front Genet Genetics Although immunotherapy is a potential strategy to resist cancers, due to the inadequate acknowledge, this treatment is not always effective for diffuse large B cell lymphoma (DLBCL) patients. Based on the current situation, it is critical to systematically investigate the immune pattern. According to the result of univariate and multivariate cox proportional hazards, LASSO regression and Kaplan-Meier survival analysis on immune-related genes (IRGs), a prognostic signature, containing 14 IRGs (AQP9, LMBR1L, FGF20, TANK, CRP, ORM1, JAK1, BACH2, MTCP1, IFITM1, TNFSF10, FGF12, RFX5, and LAP3), was built. This model was validated by external data, and performed well. DLBCL patients were divided into low- and high-risk groups, according to risk scores from risk formula. The results of CIBERSORT showed that different immune status and infiltration pattern were observed in these two groups. Gene set enrichment analysis (GSEA) indicated 12 signaling pathways were significantly enriched in the high-risk group, such as natural killer cell-mediated cytotoxicity, toll-like receptor signaling pathway, and so on. In summary, 14 clinically significant IRGs were screened to build a risk score formula. This formula was an accurate tool to provide a certain basis for the treatment of DLBCL patients. Frontiers Media S.A. 2021-02-10 /pmc/articles/PMC7902938/ /pubmed/33643388 http://dx.doi.org/10.3389/fgene.2021.625414 Text en Copyright © 2021 Feng, Li, Pei, Huang and Li. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Feng, Pengcheng Li, Hongxia Pei, Jinhong Huang, Yan Li, Guixia Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) |
title | Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) |
title_full | Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) |
title_fullStr | Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) |
title_full_unstemmed | Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) |
title_short | Identification of a 14-Gene Prognostic Signature for Diffuse Large B Cell Lymphoma (DLBCL) |
title_sort | identification of a 14-gene prognostic signature for diffuse large b cell lymphoma (dlbcl) |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902938/ https://www.ncbi.nlm.nih.gov/pubmed/33643388 http://dx.doi.org/10.3389/fgene.2021.625414 |
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