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ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset

BACKGROUND: Accessible datasets are of fundamental importance to the advancement of Alzheimer’s disease (AD) research. The AddNeuroMed consortium conducted a longitudinal observational cohort study with the aim to discover AD biomarkers. During this study, a broad selection of data modalities was me...

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Autores principales: Birkenbihl, Colin, Westwood, Sarah, Shi, Liu, Nevado-Holgado, Alejo, Westman, Eric, Lovestone, Simon, Hofmann-Apitius, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: IOS Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902946/
https://www.ncbi.nlm.nih.gov/pubmed/33285634
http://dx.doi.org/10.3233/JAD-200948
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author Birkenbihl, Colin
Westwood, Sarah
Shi, Liu
Nevado-Holgado, Alejo
Westman, Eric
Lovestone, Simon
Hofmann-Apitius, Martin
author_facet Birkenbihl, Colin
Westwood, Sarah
Shi, Liu
Nevado-Holgado, Alejo
Westman, Eric
Lovestone, Simon
Hofmann-Apitius, Martin
author_sort Birkenbihl, Colin
collection PubMed
description BACKGROUND: Accessible datasets are of fundamental importance to the advancement of Alzheimer’s disease (AD) research. The AddNeuroMed consortium conducted a longitudinal observational cohort study with the aim to discover AD biomarkers. During this study, a broad selection of data modalities was measured including clinical assessments, magnetic resonance imaging, genotyping, transcriptomic profiling, and blood plasma proteomics. Some of the collected data were shared with third-party researchers. However, this data was incomplete, erroneous, and lacking in interoperability. OBJECTIVE: To provide the research community with an accessible, multimodal, patient-level AD cohort dataset. METHODS: We systematically addressed several limitations of the originally shared resources and provided additional unreleased data to enhance the dataset. RESULTS: In this work, we publish and describe ANMerge, a new version of the AddNeuroMed dataset. ANMerge includes multimodal data from 1,702 study participants and is accessible to the research community via a centralized portal. CONCLUSION: ANMerge is an information rich patient-level data resource that can serve as a discovery and validation cohort for data-driven AD research, such as, for example, machine learning and artificial intelligence approaches.
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spelling pubmed-79029462021-03-09 ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset Birkenbihl, Colin Westwood, Sarah Shi, Liu Nevado-Holgado, Alejo Westman, Eric Lovestone, Simon Hofmann-Apitius, Martin J Alzheimers Dis Research Article BACKGROUND: Accessible datasets are of fundamental importance to the advancement of Alzheimer’s disease (AD) research. The AddNeuroMed consortium conducted a longitudinal observational cohort study with the aim to discover AD biomarkers. During this study, a broad selection of data modalities was measured including clinical assessments, magnetic resonance imaging, genotyping, transcriptomic profiling, and blood plasma proteomics. Some of the collected data were shared with third-party researchers. However, this data was incomplete, erroneous, and lacking in interoperability. OBJECTIVE: To provide the research community with an accessible, multimodal, patient-level AD cohort dataset. METHODS: We systematically addressed several limitations of the originally shared resources and provided additional unreleased data to enhance the dataset. RESULTS: In this work, we publish and describe ANMerge, a new version of the AddNeuroMed dataset. ANMerge includes multimodal data from 1,702 study participants and is accessible to the research community via a centralized portal. CONCLUSION: ANMerge is an information rich patient-level data resource that can serve as a discovery and validation cohort for data-driven AD research, such as, for example, machine learning and artificial intelligence approaches. IOS Press 2021-01-05 /pmc/articles/PMC7902946/ /pubmed/33285634 http://dx.doi.org/10.3233/JAD-200948 Text en © 2021 – The authors. Published by IOS Press https://creativecommons.org/licenses/by-nc/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Non-Commercial (CC BY-NC 4.0) License (https://creativecommons.org/licenses/by-nc/4.0/) , which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Birkenbihl, Colin
Westwood, Sarah
Shi, Liu
Nevado-Holgado, Alejo
Westman, Eric
Lovestone, Simon
Hofmann-Apitius, Martin
ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset
title ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset
title_full ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset
title_fullStr ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset
title_full_unstemmed ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset
title_short ANMerge: A Comprehensive and Accessible Alzheimer’s Disease Patient-Level Dataset
title_sort anmerge: a comprehensive and accessible alzheimer’s disease patient-level dataset
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7902946/
https://www.ncbi.nlm.nih.gov/pubmed/33285634
http://dx.doi.org/10.3233/JAD-200948
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