Cargando…

Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis

BACKGROUND: Despite the importance of accurate Sasang type diagnosis, a unique form of Korean medicine, there have been concerns about consistency among diagnoses. We investigate a data-driven integrative diagnostic model by applying machine learning to a multicenter clinical dataset with comprehens...

Descripción completa

Detalles Bibliográficos
Autores principales: Park, Sa-Yoon, Park, Musun, Lee, Won-Yung, Lee, Choong-Yeol, Kim, Ji-Hwan, Lee, Siwoo, Kim, Chang-Eop
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7903349/
https://www.ncbi.nlm.nih.gov/pubmed/33665087
http://dx.doi.org/10.1016/j.imr.2020.100668
_version_ 1783654717896785920
author Park, Sa-Yoon
Park, Musun
Lee, Won-Yung
Lee, Choong-Yeol
Kim, Ji-Hwan
Lee, Siwoo
Kim, Chang-Eop
author_facet Park, Sa-Yoon
Park, Musun
Lee, Won-Yung
Lee, Choong-Yeol
Kim, Ji-Hwan
Lee, Siwoo
Kim, Chang-Eop
author_sort Park, Sa-Yoon
collection PubMed
description BACKGROUND: Despite the importance of accurate Sasang type diagnosis, a unique form of Korean medicine, there have been concerns about consistency among diagnoses. We investigate a data-driven integrative diagnostic model by applying machine learning to a multicenter clinical dataset with comprehensive features. METHODS: Extremely randomized trees (ERT), support vector machines, multinomial logistic regression, and K-nearest neighbor were applied, and performances were evaluated by cross-validation. The feature importance of the classifier was analyzed to understand which information is crucial in diagnosis. RESULTS: The ERT classifier showed the highest performance, with an overall f1 score of 0.60 ± 0.060. The feature classes of body measurement, personality, general information, and cold–heat were more decisive than others in classifying Sasang types. Costal angle was the most informative feature. In pairwise classification, we found Sasang type-dependent distinctions that body measurement features played a key role in TE-SE and TE-SY datasets, while personality and cold–heat features showed importance in SE-SY dataset. CONCLUSION: Current study investigated a comprehensive diagnostic model for Sasang type using machine learning and achieved better performance than previous studies. This study helps data-driven decision making in clinics by revealing key features contributing to the Sasang type diagnosis.
format Online
Article
Text
id pubmed-7903349
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-79033492021-03-03 Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis Park, Sa-Yoon Park, Musun Lee, Won-Yung Lee, Choong-Yeol Kim, Ji-Hwan Lee, Siwoo Kim, Chang-Eop Integr Med Res Original Article BACKGROUND: Despite the importance of accurate Sasang type diagnosis, a unique form of Korean medicine, there have been concerns about consistency among diagnoses. We investigate a data-driven integrative diagnostic model by applying machine learning to a multicenter clinical dataset with comprehensive features. METHODS: Extremely randomized trees (ERT), support vector machines, multinomial logistic regression, and K-nearest neighbor were applied, and performances were evaluated by cross-validation. The feature importance of the classifier was analyzed to understand which information is crucial in diagnosis. RESULTS: The ERT classifier showed the highest performance, with an overall f1 score of 0.60 ± 0.060. The feature classes of body measurement, personality, general information, and cold–heat were more decisive than others in classifying Sasang types. Costal angle was the most informative feature. In pairwise classification, we found Sasang type-dependent distinctions that body measurement features played a key role in TE-SE and TE-SY datasets, while personality and cold–heat features showed importance in SE-SY dataset. CONCLUSION: Current study investigated a comprehensive diagnostic model for Sasang type using machine learning and achieved better performance than previous studies. This study helps data-driven decision making in clinics by revealing key features contributing to the Sasang type diagnosis. Elsevier 2021-09 2020-09-30 /pmc/articles/PMC7903349/ /pubmed/33665087 http://dx.doi.org/10.1016/j.imr.2020.100668 Text en © 2021 Korea Institute of Oriental Medicine. Publishing services by Elsevier B.V. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Park, Sa-Yoon
Park, Musun
Lee, Won-Yung
Lee, Choong-Yeol
Kim, Ji-Hwan
Lee, Siwoo
Kim, Chang-Eop
Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
title Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
title_full Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
title_fullStr Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
title_full_unstemmed Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
title_short Machine learning-based prediction of Sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
title_sort machine learning-based prediction of sasang constitution types using comprehensive clinical information and identification of key features for diagnosis
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7903349/
https://www.ncbi.nlm.nih.gov/pubmed/33665087
http://dx.doi.org/10.1016/j.imr.2020.100668
work_keys_str_mv AT parksayoon machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis
AT parkmusun machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis
AT leewonyung machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis
AT leechoongyeol machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis
AT kimjihwan machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis
AT leesiwoo machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis
AT kimchangeop machinelearningbasedpredictionofsasangconstitutiontypesusingcomprehensiveclinicalinformationandidentificationofkeyfeaturesfordiagnosis