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Robust direct digital-to-biological data storage in living cells
DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904632/ https://www.ncbi.nlm.nih.gov/pubmed/33432236 http://dx.doi.org/10.1038/s41589-020-00711-4 |
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author | Yim, Sung Sun McBee, Ross M. Song, Alan M. Huang, Yiming Sheth, Ravi U. Wang, Harris H. |
author_facet | Yim, Sung Sun McBee, Ross M. Song, Alan M. Huang, Yiming Sheth, Ravi U. Wang, Harris H. |
author_sort | Yim, Sung Sun |
collection | PubMed |
description | DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode digital data into the chromosomes of living cells in a single step. Here, we describe a new electrogenetic framework for direct storage of digital data in living cells. Using an engineered redox-responsive CRISPR adaptation system, we encoded binary data in 3-bit units into CRISPR arrays of bacterial cells by electrical stimulation. We demonstrated multiplex data encoding into barcoded cell populations to yield meaningful information storage and capacity up to 72 bits, which can be maintained over many generations in natural open environments. This work establishes a direct digital-to-biological data storage framework and advances our capacity for information exchange between silicon- and carbon-based entities. |
format | Online Article Text |
id | pubmed-7904632 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
record_format | MEDLINE/PubMed |
spelling | pubmed-79046322021-07-11 Robust direct digital-to-biological data storage in living cells Yim, Sung Sun McBee, Ross M. Song, Alan M. Huang, Yiming Sheth, Ravi U. Wang, Harris H. Nat Chem Biol Article DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode digital data into the chromosomes of living cells in a single step. Here, we describe a new electrogenetic framework for direct storage of digital data in living cells. Using an engineered redox-responsive CRISPR adaptation system, we encoded binary data in 3-bit units into CRISPR arrays of bacterial cells by electrical stimulation. We demonstrated multiplex data encoding into barcoded cell populations to yield meaningful information storage and capacity up to 72 bits, which can be maintained over many generations in natural open environments. This work establishes a direct digital-to-biological data storage framework and advances our capacity for information exchange between silicon- and carbon-based entities. 2021-01-11 2021-03 /pmc/articles/PMC7904632/ /pubmed/33432236 http://dx.doi.org/10.1038/s41589-020-00711-4 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Yim, Sung Sun McBee, Ross M. Song, Alan M. Huang, Yiming Sheth, Ravi U. Wang, Harris H. Robust direct digital-to-biological data storage in living cells |
title | Robust direct digital-to-biological data storage in living cells |
title_full | Robust direct digital-to-biological data storage in living cells |
title_fullStr | Robust direct digital-to-biological data storage in living cells |
title_full_unstemmed | Robust direct digital-to-biological data storage in living cells |
title_short | Robust direct digital-to-biological data storage in living cells |
title_sort | robust direct digital-to-biological data storage in living cells |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904632/ https://www.ncbi.nlm.nih.gov/pubmed/33432236 http://dx.doi.org/10.1038/s41589-020-00711-4 |
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