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Robust direct digital-to-biological data storage in living cells

DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode...

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Autores principales: Yim, Sung Sun, McBee, Ross M., Song, Alan M., Huang, Yiming, Sheth, Ravi U., Wang, Harris H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904632/
https://www.ncbi.nlm.nih.gov/pubmed/33432236
http://dx.doi.org/10.1038/s41589-020-00711-4
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author Yim, Sung Sun
McBee, Ross M.
Song, Alan M.
Huang, Yiming
Sheth, Ravi U.
Wang, Harris H.
author_facet Yim, Sung Sun
McBee, Ross M.
Song, Alan M.
Huang, Yiming
Sheth, Ravi U.
Wang, Harris H.
author_sort Yim, Sung Sun
collection PubMed
description DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode digital data into the chromosomes of living cells in a single step. Here, we describe a new electrogenetic framework for direct storage of digital data in living cells. Using an engineered redox-responsive CRISPR adaptation system, we encoded binary data in 3-bit units into CRISPR arrays of bacterial cells by electrical stimulation. We demonstrated multiplex data encoding into barcoded cell populations to yield meaningful information storage and capacity up to 72 bits, which can be maintained over many generations in natural open environments. This work establishes a direct digital-to-biological data storage framework and advances our capacity for information exchange between silicon- and carbon-based entities.
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spelling pubmed-79046322021-07-11 Robust direct digital-to-biological data storage in living cells Yim, Sung Sun McBee, Ross M. Song, Alan M. Huang, Yiming Sheth, Ravi U. Wang, Harris H. Nat Chem Biol Article DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode digital data into the chromosomes of living cells in a single step. Here, we describe a new electrogenetic framework for direct storage of digital data in living cells. Using an engineered redox-responsive CRISPR adaptation system, we encoded binary data in 3-bit units into CRISPR arrays of bacterial cells by electrical stimulation. We demonstrated multiplex data encoding into barcoded cell populations to yield meaningful information storage and capacity up to 72 bits, which can be maintained over many generations in natural open environments. This work establishes a direct digital-to-biological data storage framework and advances our capacity for information exchange between silicon- and carbon-based entities. 2021-01-11 2021-03 /pmc/articles/PMC7904632/ /pubmed/33432236 http://dx.doi.org/10.1038/s41589-020-00711-4 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Yim, Sung Sun
McBee, Ross M.
Song, Alan M.
Huang, Yiming
Sheth, Ravi U.
Wang, Harris H.
Robust direct digital-to-biological data storage in living cells
title Robust direct digital-to-biological data storage in living cells
title_full Robust direct digital-to-biological data storage in living cells
title_fullStr Robust direct digital-to-biological data storage in living cells
title_full_unstemmed Robust direct digital-to-biological data storage in living cells
title_short Robust direct digital-to-biological data storage in living cells
title_sort robust direct digital-to-biological data storage in living cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904632/
https://www.ncbi.nlm.nih.gov/pubmed/33432236
http://dx.doi.org/10.1038/s41589-020-00711-4
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