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Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries

Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirm...

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Autores principales: Gharahkhani, Puya, Jorgenson, Eric, Hysi, Pirro, Khawaja, Anthony P., Pendergrass, Sarah, Han, Xikun, Ong, Jue Sheng, Hewitt, Alex W., Segrè, Ayellet V., Rouhana, John M., Hamel, Andrew R., Igo, Robert P., Choquet, Helene, Qassim, Ayub, Josyula, Navya S., Cooke Bailey, Jessica N., Bonnemaijer, Pieter W. M., Iglesias, Adriana, Siggs, Owen M., Young, Terri L., Vitart, Veronique, Thiadens, Alberta A. H. J., Karjalainen, Juha, Uebe, Steffen, Melles, Ronald B., Nair, K. Saidas, Luben, Robert, Simcoe, Mark, Amersinghe, Nishani, Cree, Angela J., Hohn, Rene, Poplawski, Alicia, Chen, Li Jia, Rong, Shi-Song, Aung, Tin, Vithana, Eranga Nishanthie, Tamiya, Gen, Shiga, Yukihiro, Yamamoto, Masayuki, Nakazawa, Toru, Currant, Hannah, Birney, Ewan, Wang, Xin, Auton, Adam, Lupton, Michelle K., Martin, Nicholas G., Ashaye, Adeyinka, Olawoye, Olusola, Williams, Susan E., Akafo, Stephen, Ramsay, Michele, Hashimoto, Kazuki, Kamatani, Yoichiro, Akiyama, Masato, Momozawa, Yukihide, Foster, Paul J., Khaw, Peng T., Morgan, James E., Strouthidis, Nicholas G., Kraft, Peter, Kang, Jae H., Pang, Chi Pui, Pasutto, Francesca, Mitchell, Paul, Lotery, Andrew J., Palotie, Aarno, van Duijn, Cornelia, Haines, Jonathan L., Hammond, Chris, Pasquale, Louis R., Klaver, Caroline C. W., Hauser, Michael, Khor, Chiea Chuen, Mackey, David A., Kubo, Michiaki, Cheng, Ching-Yu, Craig, Jamie E., MacGregor, Stuart, Wiggs, Janey L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904932/
https://www.ncbi.nlm.nih.gov/pubmed/33627673
http://dx.doi.org/10.1038/s41467-020-20851-4
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author Gharahkhani, Puya
Jorgenson, Eric
Hysi, Pirro
Khawaja, Anthony P.
Pendergrass, Sarah
Han, Xikun
Ong, Jue Sheng
Hewitt, Alex W.
Segrè, Ayellet V.
Rouhana, John M.
Hamel, Andrew R.
Igo, Robert P.
Choquet, Helene
Qassim, Ayub
Josyula, Navya S.
Cooke Bailey, Jessica N.
Bonnemaijer, Pieter W. M.
Iglesias, Adriana
Siggs, Owen M.
Young, Terri L.
Vitart, Veronique
Thiadens, Alberta A. H. J.
Karjalainen, Juha
Uebe, Steffen
Melles, Ronald B.
Nair, K. Saidas
Luben, Robert
Simcoe, Mark
Amersinghe, Nishani
Cree, Angela J.
Hohn, Rene
Poplawski, Alicia
Chen, Li Jia
Rong, Shi-Song
Aung, Tin
Vithana, Eranga Nishanthie
Tamiya, Gen
Shiga, Yukihiro
Yamamoto, Masayuki
Nakazawa, Toru
Currant, Hannah
Birney, Ewan
Wang, Xin
Auton, Adam
Lupton, Michelle K.
Martin, Nicholas G.
Ashaye, Adeyinka
Olawoye, Olusola
Williams, Susan E.
Akafo, Stephen
Ramsay, Michele
Hashimoto, Kazuki
Kamatani, Yoichiro
Akiyama, Masato
Momozawa, Yukihide
Foster, Paul J.
Khaw, Peng T.
Morgan, James E.
Strouthidis, Nicholas G.
Kraft, Peter
Kang, Jae H.
Pang, Chi Pui
Pasutto, Francesca
Mitchell, Paul
Lotery, Andrew J.
Palotie, Aarno
van Duijn, Cornelia
Haines, Jonathan L.
Hammond, Chris
Pasquale, Louis R.
Klaver, Caroline C. W.
Hauser, Michael
Khor, Chiea Chuen
Mackey, David A.
Kubo, Michiaki
Cheng, Ching-Yu
Craig, Jamie E.
MacGregor, Stuart
Wiggs, Janey L.
author_facet Gharahkhani, Puya
Jorgenson, Eric
Hysi, Pirro
Khawaja, Anthony P.
Pendergrass, Sarah
Han, Xikun
Ong, Jue Sheng
Hewitt, Alex W.
Segrè, Ayellet V.
Rouhana, John M.
Hamel, Andrew R.
Igo, Robert P.
Choquet, Helene
Qassim, Ayub
Josyula, Navya S.
Cooke Bailey, Jessica N.
Bonnemaijer, Pieter W. M.
Iglesias, Adriana
Siggs, Owen M.
Young, Terri L.
Vitart, Veronique
Thiadens, Alberta A. H. J.
Karjalainen, Juha
Uebe, Steffen
Melles, Ronald B.
Nair, K. Saidas
Luben, Robert
Simcoe, Mark
Amersinghe, Nishani
Cree, Angela J.
Hohn, Rene
Poplawski, Alicia
Chen, Li Jia
Rong, Shi-Song
Aung, Tin
Vithana, Eranga Nishanthie
Tamiya, Gen
Shiga, Yukihiro
Yamamoto, Masayuki
Nakazawa, Toru
Currant, Hannah
Birney, Ewan
Wang, Xin
Auton, Adam
Lupton, Michelle K.
Martin, Nicholas G.
Ashaye, Adeyinka
Olawoye, Olusola
Williams, Susan E.
Akafo, Stephen
Ramsay, Michele
Hashimoto, Kazuki
Kamatani, Yoichiro
Akiyama, Masato
Momozawa, Yukihide
Foster, Paul J.
Khaw, Peng T.
Morgan, James E.
Strouthidis, Nicholas G.
Kraft, Peter
Kang, Jae H.
Pang, Chi Pui
Pasutto, Francesca
Mitchell, Paul
Lotery, Andrew J.
Palotie, Aarno
van Duijn, Cornelia
Haines, Jonathan L.
Hammond, Chris
Pasquale, Louis R.
Klaver, Caroline C. W.
Hauser, Michael
Khor, Chiea Chuen
Mackey, David A.
Kubo, Michiaki
Cheng, Ching-Yu
Craig, Jamie E.
MacGregor, Stuart
Wiggs, Janey L.
author_sort Gharahkhani, Puya
collection PubMed
description Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates.
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spelling pubmed-79049322021-03-11 Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries Gharahkhani, Puya Jorgenson, Eric Hysi, Pirro Khawaja, Anthony P. Pendergrass, Sarah Han, Xikun Ong, Jue Sheng Hewitt, Alex W. Segrè, Ayellet V. Rouhana, John M. Hamel, Andrew R. Igo, Robert P. Choquet, Helene Qassim, Ayub Josyula, Navya S. Cooke Bailey, Jessica N. Bonnemaijer, Pieter W. M. Iglesias, Adriana Siggs, Owen M. Young, Terri L. Vitart, Veronique Thiadens, Alberta A. H. J. Karjalainen, Juha Uebe, Steffen Melles, Ronald B. Nair, K. Saidas Luben, Robert Simcoe, Mark Amersinghe, Nishani Cree, Angela J. Hohn, Rene Poplawski, Alicia Chen, Li Jia Rong, Shi-Song Aung, Tin Vithana, Eranga Nishanthie Tamiya, Gen Shiga, Yukihiro Yamamoto, Masayuki Nakazawa, Toru Currant, Hannah Birney, Ewan Wang, Xin Auton, Adam Lupton, Michelle K. Martin, Nicholas G. Ashaye, Adeyinka Olawoye, Olusola Williams, Susan E. Akafo, Stephen Ramsay, Michele Hashimoto, Kazuki Kamatani, Yoichiro Akiyama, Masato Momozawa, Yukihide Foster, Paul J. Khaw, Peng T. Morgan, James E. Strouthidis, Nicholas G. Kraft, Peter Kang, Jae H. Pang, Chi Pui Pasutto, Francesca Mitchell, Paul Lotery, Andrew J. Palotie, Aarno van Duijn, Cornelia Haines, Jonathan L. Hammond, Chris Pasquale, Louis R. Klaver, Caroline C. W. Hauser, Michael Khor, Chiea Chuen Mackey, David A. Kubo, Michiaki Cheng, Ching-Yu Craig, Jamie E. MacGregor, Stuart Wiggs, Janey L. Nat Commun Article Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates. Nature Publishing Group UK 2021-02-24 /pmc/articles/PMC7904932/ /pubmed/33627673 http://dx.doi.org/10.1038/s41467-020-20851-4 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Gharahkhani, Puya
Jorgenson, Eric
Hysi, Pirro
Khawaja, Anthony P.
Pendergrass, Sarah
Han, Xikun
Ong, Jue Sheng
Hewitt, Alex W.
Segrè, Ayellet V.
Rouhana, John M.
Hamel, Andrew R.
Igo, Robert P.
Choquet, Helene
Qassim, Ayub
Josyula, Navya S.
Cooke Bailey, Jessica N.
Bonnemaijer, Pieter W. M.
Iglesias, Adriana
Siggs, Owen M.
Young, Terri L.
Vitart, Veronique
Thiadens, Alberta A. H. J.
Karjalainen, Juha
Uebe, Steffen
Melles, Ronald B.
Nair, K. Saidas
Luben, Robert
Simcoe, Mark
Amersinghe, Nishani
Cree, Angela J.
Hohn, Rene
Poplawski, Alicia
Chen, Li Jia
Rong, Shi-Song
Aung, Tin
Vithana, Eranga Nishanthie
Tamiya, Gen
Shiga, Yukihiro
Yamamoto, Masayuki
Nakazawa, Toru
Currant, Hannah
Birney, Ewan
Wang, Xin
Auton, Adam
Lupton, Michelle K.
Martin, Nicholas G.
Ashaye, Adeyinka
Olawoye, Olusola
Williams, Susan E.
Akafo, Stephen
Ramsay, Michele
Hashimoto, Kazuki
Kamatani, Yoichiro
Akiyama, Masato
Momozawa, Yukihide
Foster, Paul J.
Khaw, Peng T.
Morgan, James E.
Strouthidis, Nicholas G.
Kraft, Peter
Kang, Jae H.
Pang, Chi Pui
Pasutto, Francesca
Mitchell, Paul
Lotery, Andrew J.
Palotie, Aarno
van Duijn, Cornelia
Haines, Jonathan L.
Hammond, Chris
Pasquale, Louis R.
Klaver, Caroline C. W.
Hauser, Michael
Khor, Chiea Chuen
Mackey, David A.
Kubo, Michiaki
Cheng, Ching-Yu
Craig, Jamie E.
MacGregor, Stuart
Wiggs, Janey L.
Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
title Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
title_full Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
title_fullStr Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
title_full_unstemmed Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
title_short Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
title_sort genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904932/
https://www.ncbi.nlm.nih.gov/pubmed/33627673
http://dx.doi.org/10.1038/s41467-020-20851-4
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