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Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirm...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904932/ https://www.ncbi.nlm.nih.gov/pubmed/33627673 http://dx.doi.org/10.1038/s41467-020-20851-4 |
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author | Gharahkhani, Puya Jorgenson, Eric Hysi, Pirro Khawaja, Anthony P. Pendergrass, Sarah Han, Xikun Ong, Jue Sheng Hewitt, Alex W. Segrè, Ayellet V. Rouhana, John M. Hamel, Andrew R. Igo, Robert P. Choquet, Helene Qassim, Ayub Josyula, Navya S. Cooke Bailey, Jessica N. Bonnemaijer, Pieter W. M. Iglesias, Adriana Siggs, Owen M. Young, Terri L. Vitart, Veronique Thiadens, Alberta A. H. J. Karjalainen, Juha Uebe, Steffen Melles, Ronald B. Nair, K. Saidas Luben, Robert Simcoe, Mark Amersinghe, Nishani Cree, Angela J. Hohn, Rene Poplawski, Alicia Chen, Li Jia Rong, Shi-Song Aung, Tin Vithana, Eranga Nishanthie Tamiya, Gen Shiga, Yukihiro Yamamoto, Masayuki Nakazawa, Toru Currant, Hannah Birney, Ewan Wang, Xin Auton, Adam Lupton, Michelle K. Martin, Nicholas G. Ashaye, Adeyinka Olawoye, Olusola Williams, Susan E. Akafo, Stephen Ramsay, Michele Hashimoto, Kazuki Kamatani, Yoichiro Akiyama, Masato Momozawa, Yukihide Foster, Paul J. Khaw, Peng T. Morgan, James E. Strouthidis, Nicholas G. Kraft, Peter Kang, Jae H. Pang, Chi Pui Pasutto, Francesca Mitchell, Paul Lotery, Andrew J. Palotie, Aarno van Duijn, Cornelia Haines, Jonathan L. Hammond, Chris Pasquale, Louis R. Klaver, Caroline C. W. Hauser, Michael Khor, Chiea Chuen Mackey, David A. Kubo, Michiaki Cheng, Ching-Yu Craig, Jamie E. MacGregor, Stuart Wiggs, Janey L. |
author_facet | Gharahkhani, Puya Jorgenson, Eric Hysi, Pirro Khawaja, Anthony P. Pendergrass, Sarah Han, Xikun Ong, Jue Sheng Hewitt, Alex W. Segrè, Ayellet V. Rouhana, John M. Hamel, Andrew R. Igo, Robert P. Choquet, Helene Qassim, Ayub Josyula, Navya S. Cooke Bailey, Jessica N. Bonnemaijer, Pieter W. M. Iglesias, Adriana Siggs, Owen M. Young, Terri L. Vitart, Veronique Thiadens, Alberta A. H. J. Karjalainen, Juha Uebe, Steffen Melles, Ronald B. Nair, K. Saidas Luben, Robert Simcoe, Mark Amersinghe, Nishani Cree, Angela J. Hohn, Rene Poplawski, Alicia Chen, Li Jia Rong, Shi-Song Aung, Tin Vithana, Eranga Nishanthie Tamiya, Gen Shiga, Yukihiro Yamamoto, Masayuki Nakazawa, Toru Currant, Hannah Birney, Ewan Wang, Xin Auton, Adam Lupton, Michelle K. Martin, Nicholas G. Ashaye, Adeyinka Olawoye, Olusola Williams, Susan E. Akafo, Stephen Ramsay, Michele Hashimoto, Kazuki Kamatani, Yoichiro Akiyama, Masato Momozawa, Yukihide Foster, Paul J. Khaw, Peng T. Morgan, James E. Strouthidis, Nicholas G. Kraft, Peter Kang, Jae H. Pang, Chi Pui Pasutto, Francesca Mitchell, Paul Lotery, Andrew J. Palotie, Aarno van Duijn, Cornelia Haines, Jonathan L. Hammond, Chris Pasquale, Louis R. Klaver, Caroline C. W. Hauser, Michael Khor, Chiea Chuen Mackey, David A. Kubo, Michiaki Cheng, Ching-Yu Craig, Jamie E. MacGregor, Stuart Wiggs, Janey L. |
author_sort | Gharahkhani, Puya |
collection | PubMed |
description | Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates. |
format | Online Article Text |
id | pubmed-7904932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79049322021-03-11 Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries Gharahkhani, Puya Jorgenson, Eric Hysi, Pirro Khawaja, Anthony P. Pendergrass, Sarah Han, Xikun Ong, Jue Sheng Hewitt, Alex W. Segrè, Ayellet V. Rouhana, John M. Hamel, Andrew R. Igo, Robert P. Choquet, Helene Qassim, Ayub Josyula, Navya S. Cooke Bailey, Jessica N. Bonnemaijer, Pieter W. M. Iglesias, Adriana Siggs, Owen M. Young, Terri L. Vitart, Veronique Thiadens, Alberta A. H. J. Karjalainen, Juha Uebe, Steffen Melles, Ronald B. Nair, K. Saidas Luben, Robert Simcoe, Mark Amersinghe, Nishani Cree, Angela J. Hohn, Rene Poplawski, Alicia Chen, Li Jia Rong, Shi-Song Aung, Tin Vithana, Eranga Nishanthie Tamiya, Gen Shiga, Yukihiro Yamamoto, Masayuki Nakazawa, Toru Currant, Hannah Birney, Ewan Wang, Xin Auton, Adam Lupton, Michelle K. Martin, Nicholas G. Ashaye, Adeyinka Olawoye, Olusola Williams, Susan E. Akafo, Stephen Ramsay, Michele Hashimoto, Kazuki Kamatani, Yoichiro Akiyama, Masato Momozawa, Yukihide Foster, Paul J. Khaw, Peng T. Morgan, James E. Strouthidis, Nicholas G. Kraft, Peter Kang, Jae H. Pang, Chi Pui Pasutto, Francesca Mitchell, Paul Lotery, Andrew J. Palotie, Aarno van Duijn, Cornelia Haines, Jonathan L. Hammond, Chris Pasquale, Louis R. Klaver, Caroline C. W. Hauser, Michael Khor, Chiea Chuen Mackey, David A. Kubo, Michiaki Cheng, Ching-Yu Craig, Jamie E. MacGregor, Stuart Wiggs, Janey L. Nat Commun Article Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates. Nature Publishing Group UK 2021-02-24 /pmc/articles/PMC7904932/ /pubmed/33627673 http://dx.doi.org/10.1038/s41467-020-20851-4 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Gharahkhani, Puya Jorgenson, Eric Hysi, Pirro Khawaja, Anthony P. Pendergrass, Sarah Han, Xikun Ong, Jue Sheng Hewitt, Alex W. Segrè, Ayellet V. Rouhana, John M. Hamel, Andrew R. Igo, Robert P. Choquet, Helene Qassim, Ayub Josyula, Navya S. Cooke Bailey, Jessica N. Bonnemaijer, Pieter W. M. Iglesias, Adriana Siggs, Owen M. Young, Terri L. Vitart, Veronique Thiadens, Alberta A. H. J. Karjalainen, Juha Uebe, Steffen Melles, Ronald B. Nair, K. Saidas Luben, Robert Simcoe, Mark Amersinghe, Nishani Cree, Angela J. Hohn, Rene Poplawski, Alicia Chen, Li Jia Rong, Shi-Song Aung, Tin Vithana, Eranga Nishanthie Tamiya, Gen Shiga, Yukihiro Yamamoto, Masayuki Nakazawa, Toru Currant, Hannah Birney, Ewan Wang, Xin Auton, Adam Lupton, Michelle K. Martin, Nicholas G. Ashaye, Adeyinka Olawoye, Olusola Williams, Susan E. Akafo, Stephen Ramsay, Michele Hashimoto, Kazuki Kamatani, Yoichiro Akiyama, Masato Momozawa, Yukihide Foster, Paul J. Khaw, Peng T. Morgan, James E. Strouthidis, Nicholas G. Kraft, Peter Kang, Jae H. Pang, Chi Pui Pasutto, Francesca Mitchell, Paul Lotery, Andrew J. Palotie, Aarno van Duijn, Cornelia Haines, Jonathan L. Hammond, Chris Pasquale, Louis R. Klaver, Caroline C. W. Hauser, Michael Khor, Chiea Chuen Mackey, David A. Kubo, Michiaki Cheng, Ching-Yu Craig, Jamie E. MacGregor, Stuart Wiggs, Janey L. Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
title | Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
title_full | Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
title_fullStr | Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
title_full_unstemmed | Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
title_short | Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
title_sort | genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7904932/ https://www.ncbi.nlm.nih.gov/pubmed/33627673 http://dx.doi.org/10.1038/s41467-020-20851-4 |
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