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Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma

Melanoma is a life-threatening form of skin cancer with an elevated risk of metastasis and high mortality rates. The prognosis and clinical outcomes of cancer immunotherapy in melanoma patients are influenced by immune cell infiltration in the tumor microenvironment (TME) and the expression of genet...

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Autores principales: Zeng, Yangyang, Zeng, Yulan, Yin, Hang, Chen, Fengxia, Wang, Qingqing, Yu, Xiaoyan, Zhou, Yunfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906183/
https://www.ncbi.nlm.nih.gov/pubmed/33428606
http://dx.doi.org/10.18632/aging.202279
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author Zeng, Yangyang
Zeng, Yulan
Yin, Hang
Chen, Fengxia
Wang, Qingqing
Yu, Xiaoyan
Zhou, Yunfeng
author_facet Zeng, Yangyang
Zeng, Yulan
Yin, Hang
Chen, Fengxia
Wang, Qingqing
Yu, Xiaoyan
Zhou, Yunfeng
author_sort Zeng, Yangyang
collection PubMed
description Melanoma is a life-threatening form of skin cancer with an elevated risk of metastasis and high mortality rates. The prognosis and clinical outcomes of cancer immunotherapy in melanoma patients are influenced by immune cell infiltration in the tumor microenvironment (TME) and the expression of genetic factors. Despite reports suggesting that immune-classification may have a better prediction of prognosis compared to the American Joint Committee on Cancer/Union for International Cancer Control (AJCC/UICC) TNM-classification, the definition of Immunoscore in melanoma is becoming a difficult challenge. In this study, we established and verified a 7-gene prognostic signature. Melanoma patients from the Cancer Genome Atlas (TCGA) were separated into a low-risk group and a high-risk group using the median risk score. Receiver operating characteristic (ROC) analysis for overall survival (OS) showed that the area under the curve (AUC) was 0.701 for 1 year, 0.726 for 3 years, and 0.745 for 5 years, respectively. Moreover, a nomogram was constructed as a practical prognostic tool, and the AUC was 0.829 for 3 years, and 0.803 for 5 years, respectively. Furthermore, we validated the above results in two datasets from the Gene Expression Omnibus (GEO) database and the relationship between 7-gene prognostic signature and immune infiltration estimated.
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spelling pubmed-79061832021-03-04 Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma Zeng, Yangyang Zeng, Yulan Yin, Hang Chen, Fengxia Wang, Qingqing Yu, Xiaoyan Zhou, Yunfeng Aging (Albany NY) Research Paper Melanoma is a life-threatening form of skin cancer with an elevated risk of metastasis and high mortality rates. The prognosis and clinical outcomes of cancer immunotherapy in melanoma patients are influenced by immune cell infiltration in the tumor microenvironment (TME) and the expression of genetic factors. Despite reports suggesting that immune-classification may have a better prediction of prognosis compared to the American Joint Committee on Cancer/Union for International Cancer Control (AJCC/UICC) TNM-classification, the definition of Immunoscore in melanoma is becoming a difficult challenge. In this study, we established and verified a 7-gene prognostic signature. Melanoma patients from the Cancer Genome Atlas (TCGA) were separated into a low-risk group and a high-risk group using the median risk score. Receiver operating characteristic (ROC) analysis for overall survival (OS) showed that the area under the curve (AUC) was 0.701 for 1 year, 0.726 for 3 years, and 0.745 for 5 years, respectively. Moreover, a nomogram was constructed as a practical prognostic tool, and the AUC was 0.829 for 3 years, and 0.803 for 5 years, respectively. Furthermore, we validated the above results in two datasets from the Gene Expression Omnibus (GEO) database and the relationship between 7-gene prognostic signature and immune infiltration estimated. Impact Journals 2021-01-10 /pmc/articles/PMC7906183/ /pubmed/33428606 http://dx.doi.org/10.18632/aging.202279 Text en Copyright: © 2021 Zeng et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Zeng, Yangyang
Zeng, Yulan
Yin, Hang
Chen, Fengxia
Wang, Qingqing
Yu, Xiaoyan
Zhou, Yunfeng
Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
title Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
title_full Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
title_fullStr Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
title_full_unstemmed Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
title_short Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
title_sort exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906183/
https://www.ncbi.nlm.nih.gov/pubmed/33428606
http://dx.doi.org/10.18632/aging.202279
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