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Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
Melanoma is a life-threatening form of skin cancer with an elevated risk of metastasis and high mortality rates. The prognosis and clinical outcomes of cancer immunotherapy in melanoma patients are influenced by immune cell infiltration in the tumor microenvironment (TME) and the expression of genet...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906183/ https://www.ncbi.nlm.nih.gov/pubmed/33428606 http://dx.doi.org/10.18632/aging.202279 |
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author | Zeng, Yangyang Zeng, Yulan Yin, Hang Chen, Fengxia Wang, Qingqing Yu, Xiaoyan Zhou, Yunfeng |
author_facet | Zeng, Yangyang Zeng, Yulan Yin, Hang Chen, Fengxia Wang, Qingqing Yu, Xiaoyan Zhou, Yunfeng |
author_sort | Zeng, Yangyang |
collection | PubMed |
description | Melanoma is a life-threatening form of skin cancer with an elevated risk of metastasis and high mortality rates. The prognosis and clinical outcomes of cancer immunotherapy in melanoma patients are influenced by immune cell infiltration in the tumor microenvironment (TME) and the expression of genetic factors. Despite reports suggesting that immune-classification may have a better prediction of prognosis compared to the American Joint Committee on Cancer/Union for International Cancer Control (AJCC/UICC) TNM-classification, the definition of Immunoscore in melanoma is becoming a difficult challenge. In this study, we established and verified a 7-gene prognostic signature. Melanoma patients from the Cancer Genome Atlas (TCGA) were separated into a low-risk group and a high-risk group using the median risk score. Receiver operating characteristic (ROC) analysis for overall survival (OS) showed that the area under the curve (AUC) was 0.701 for 1 year, 0.726 for 3 years, and 0.745 for 5 years, respectively. Moreover, a nomogram was constructed as a practical prognostic tool, and the AUC was 0.829 for 3 years, and 0.803 for 5 years, respectively. Furthermore, we validated the above results in two datasets from the Gene Expression Omnibus (GEO) database and the relationship between 7-gene prognostic signature and immune infiltration estimated. |
format | Online Article Text |
id | pubmed-7906183 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-79061832021-03-04 Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma Zeng, Yangyang Zeng, Yulan Yin, Hang Chen, Fengxia Wang, Qingqing Yu, Xiaoyan Zhou, Yunfeng Aging (Albany NY) Research Paper Melanoma is a life-threatening form of skin cancer with an elevated risk of metastasis and high mortality rates. The prognosis and clinical outcomes of cancer immunotherapy in melanoma patients are influenced by immune cell infiltration in the tumor microenvironment (TME) and the expression of genetic factors. Despite reports suggesting that immune-classification may have a better prediction of prognosis compared to the American Joint Committee on Cancer/Union for International Cancer Control (AJCC/UICC) TNM-classification, the definition of Immunoscore in melanoma is becoming a difficult challenge. In this study, we established and verified a 7-gene prognostic signature. Melanoma patients from the Cancer Genome Atlas (TCGA) were separated into a low-risk group and a high-risk group using the median risk score. Receiver operating characteristic (ROC) analysis for overall survival (OS) showed that the area under the curve (AUC) was 0.701 for 1 year, 0.726 for 3 years, and 0.745 for 5 years, respectively. Moreover, a nomogram was constructed as a practical prognostic tool, and the AUC was 0.829 for 3 years, and 0.803 for 5 years, respectively. Furthermore, we validated the above results in two datasets from the Gene Expression Omnibus (GEO) database and the relationship between 7-gene prognostic signature and immune infiltration estimated. Impact Journals 2021-01-10 /pmc/articles/PMC7906183/ /pubmed/33428606 http://dx.doi.org/10.18632/aging.202279 Text en Copyright: © 2021 Zeng et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Zeng, Yangyang Zeng, Yulan Yin, Hang Chen, Fengxia Wang, Qingqing Yu, Xiaoyan Zhou, Yunfeng Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
title | Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
title_full | Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
title_fullStr | Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
title_full_unstemmed | Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
title_short | Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
title_sort | exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906183/ https://www.ncbi.nlm.nih.gov/pubmed/33428606 http://dx.doi.org/10.18632/aging.202279 |
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